miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12194 3' -54.7 NC_003309.1 + 17779 0.67 0.710591
Target:  5'- aUACGGCGCAcACGGAUCaGccagccguuuuUCGCGCg -3'
miRNA:   3'- cGUGCCGCGU-UGCUUGGaC-----------AGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 11759 0.67 0.700922
Target:  5'- cGCcCGGCGaucagccccgccauGCGGACCUGcgcgucguUCGCGCUc -3'
miRNA:   3'- -CGuGCCGCgu------------UGCUUGGAC--------AGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 4689 0.65 0.782041
Target:  5'- uCGCGGcCGC-GCGAGCCgaaacGcuacggcgcgcauUCGCGCCu -3'
miRNA:   3'- cGUGCC-GCGuUGCUUGGa----C-------------AGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 37926 0.67 0.699845
Target:  5'- aGCGCGGCcuuuCGGCGGggcgGCCcGUaugCGCGCCc -3'
miRNA:   3'- -CGUGCCGc---GUUGCU----UGGaCA---GCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 27266 0.67 0.678167
Target:  5'- aCGCGGCGUuuUGAgaaucgcaGCCU-UCGCACUg -3'
miRNA:   3'- cGUGCCGCGuuGCU--------UGGAcAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 9100 0.67 0.678167
Target:  5'- aGCuCGGCG-GACGAcAUCUGcUCGCGCa -3'
miRNA:   3'- -CGuGCCGCgUUGCU-UGGAC-AGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 16203 0.67 0.678167
Target:  5'- gGC-CGGCGCGAacuCGcACCaGUCGUcgacGCCg -3'
miRNA:   3'- -CGuGCCGCGUU---GCuUGGaCAGCG----UGG- -5'
12194 3' -54.7 NC_003309.1 + 5068 0.68 0.667257
Target:  5'- uGCACgGGCGCGGCG-GCCg---GUGCCg -3'
miRNA:   3'- -CGUG-CCGCGUUGCuUGGacagCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 11990 0.68 0.667257
Target:  5'- uGCcCGcGCGCGGC-AGCCgcgGcgCGCGCCg -3'
miRNA:   3'- -CGuGC-CGCGUUGcUUGGa--Ca-GCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 18465 0.68 0.667257
Target:  5'- uGCACGGCuuCGAC-AGCCUGcUGUACUg -3'
miRNA:   3'- -CGUGCCGc-GUUGcUUGGACaGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 14571 0.68 0.667257
Target:  5'- aGCgACGcuuGCGU-AUGAAgcCCUGUUGCACCg -3'
miRNA:   3'- -CG-UGC---CGCGuUGCUU--GGACAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 47969 0.68 0.663978
Target:  5'- cGUGCGGCGCGccagcucgcgcucgGCGAAgCUG-CG-ACCg -3'
miRNA:   3'- -CGUGCCGCGU--------------UGCUUgGACaGCgUGG- -5'
12194 3' -54.7 NC_003309.1 + 1256 0.68 0.656315
Target:  5'- cGUACaGCGCGGCG---CUGUCGUGCUc -3'
miRNA:   3'- -CGUGcCGCGUUGCuugGACAGCGUGG- -5'
12194 3' -54.7 NC_003309.1 + 33997 0.68 0.656315
Target:  5'- uGCGUGGCGCAguucGCGGuaaGCgUGuUCGCACg -3'
miRNA:   3'- -CGUGCCGCGU----UGCU---UGgAC-AGCGUGg -5'
12194 3' -54.7 NC_003309.1 + 4179 0.68 0.653027
Target:  5'- aGCGCGGaUGUcguccgccagcucgAACGcGCCgGUCGCGCUc -3'
miRNA:   3'- -CGUGCC-GCG--------------UUGCuUGGaCAGCGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.