Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 17779 | 0.67 | 0.710591 |
Target: 5'- aUACGGCGCAcACGGAUCaGccagccguuuuUCGCGCg -3' miRNA: 3'- cGUGCCGCGU-UGCUUGGaC-----------AGCGUGg -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 11759 | 0.67 | 0.700922 |
Target: 5'- cGCcCGGCGaucagccccgccauGCGGACCUGcgcgucguUCGCGCUc -3' miRNA: 3'- -CGuGCCGCgu------------UGCUUGGAC--------AGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 4689 | 0.65 | 0.782041 |
Target: 5'- uCGCGGcCGC-GCGAGCCgaaacGcuacggcgcgcauUCGCGCCu -3' miRNA: 3'- cGUGCC-GCGuUGCUUGGa----C-------------AGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 37926 | 0.67 | 0.699845 |
Target: 5'- aGCGCGGCcuuuCGGCGGggcgGCCcGUaugCGCGCCc -3' miRNA: 3'- -CGUGCCGc---GUUGCU----UGGaCA---GCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 27266 | 0.67 | 0.678167 |
Target: 5'- aCGCGGCGUuuUGAgaaucgcaGCCU-UCGCACUg -3' miRNA: 3'- cGUGCCGCGuuGCU--------UGGAcAGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 9100 | 0.67 | 0.678167 |
Target: 5'- aGCuCGGCG-GACGAcAUCUGcUCGCGCa -3' miRNA: 3'- -CGuGCCGCgUUGCU-UGGAC-AGCGUGg -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 16203 | 0.67 | 0.678167 |
Target: 5'- gGC-CGGCGCGAacuCGcACCaGUCGUcgacGCCg -3' miRNA: 3'- -CGuGCCGCGUU---GCuUGGaCAGCG----UGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 5068 | 0.68 | 0.667257 |
Target: 5'- uGCACgGGCGCGGCG-GCCg---GUGCCg -3' miRNA: 3'- -CGUG-CCGCGUUGCuUGGacagCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 11990 | 0.68 | 0.667257 |
Target: 5'- uGCcCGcGCGCGGC-AGCCgcgGcgCGCGCCg -3' miRNA: 3'- -CGuGC-CGCGUUGcUUGGa--Ca-GCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 18465 | 0.68 | 0.667257 |
Target: 5'- uGCACGGCuuCGAC-AGCCUGcUGUACUg -3' miRNA: 3'- -CGUGCCGc-GUUGcUUGGACaGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 14571 | 0.68 | 0.667257 |
Target: 5'- aGCgACGcuuGCGU-AUGAAgcCCUGUUGCACCg -3' miRNA: 3'- -CG-UGC---CGCGuUGCUU--GGACAGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 47969 | 0.68 | 0.663978 |
Target: 5'- cGUGCGGCGCGccagcucgcgcucgGCGAAgCUG-CG-ACCg -3' miRNA: 3'- -CGUGCCGCGU--------------UGCUUgGACaGCgUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 1256 | 0.68 | 0.656315 |
Target: 5'- cGUACaGCGCGGCG---CUGUCGUGCUc -3' miRNA: 3'- -CGUGcCGCGUUGCuugGACAGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 33997 | 0.68 | 0.656315 |
Target: 5'- uGCGUGGCGCAguucGCGGuaaGCgUGuUCGCACg -3' miRNA: 3'- -CGUGCCGCGU----UGCU---UGgAC-AGCGUGg -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 4179 | 0.68 | 0.653027 |
Target: 5'- aGCGCGGaUGUcguccgccagcucgAACGcGCCgGUCGCGCUc -3' miRNA: 3'- -CGUGCC-GCG--------------UUGCuUGGaCAGCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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