Results 41 - 55 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 29437 | 0.66 | 0.731842 |
Target: 5'- gGCAUGGaaaGCGgcccaaagcGCGccAACCUGUUGCAUUu -3' miRNA: 3'- -CGUGCCg--CGU---------UGC--UUGGACAGCGUGG- -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 30146 | 0.66 | 0.731842 |
Target: 5'- cGgACGGCGCAGgGGAUaUG-CGC-CCa -3' miRNA: 3'- -CgUGCCGCGUUgCUUGgACaGCGuGG- -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 30269 | 0.7 | 0.505034 |
Target: 5'- aGCACGGCGCcugguauuggAGCGAGCCa---GUAUCg -3' miRNA: 3'- -CGUGCCGCG----------UUGCUUGGacagCGUGG- -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 30893 | 0.7 | 0.515468 |
Target: 5'- gGCuCGGCGUAcaacgugcgauCGAACCUaGUCGCAauCCg -3' miRNA: 3'- -CGuGCCGCGUu----------GCUUGGA-CAGCGU--GG- -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 31701 | 0.67 | 0.699845 |
Target: 5'- gGCuCGGCGCGACGAucgugaaucagGCCgagGcCG-ACCg -3' miRNA: 3'- -CGuGCCGCGUUGCU-----------UGGa--CaGCgUGG- -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 32958 | 0.72 | 0.406547 |
Target: 5'- gGCGCGagaGCGCGACGAcCCUGagcugaUCGCGgCa -3' miRNA: 3'- -CGUGC---CGCGUUGCUuGGAC------AGCGUgG- -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 33997 | 0.68 | 0.656315 |
Target: 5'- uGCGUGGCGCAguucGCGGuaaGCgUGuUCGCACg -3' miRNA: 3'- -CGUGCCGCGU----UGCU---UGgAC-AGCGUGg -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 37926 | 0.67 | 0.699845 |
Target: 5'- aGCGCGGCcuuuCGGCGGggcgGCCcGUaugCGCGCCc -3' miRNA: 3'- -CGUGCCGc---GUUGCU----UGGaCA---GCGUGG- -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 39962 | 0.78 | 0.172337 |
Target: 5'- uCGCGGCGCGcuuguCGAgcACCUGUUGCGCg -3' miRNA: 3'- cGUGCCGCGUu----GCU--UGGACAGCGUGg -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 43088 | 0.7 | 0.515468 |
Target: 5'- aCGCGGCGCgAGCGAcucaCUGcCGC-CCg -3' miRNA: 3'- cGUGCCGCG-UUGCUug--GACaGCGuGG- -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 47003 | 0.68 | 0.634374 |
Target: 5'- gGCGCGucuuCGCAGCcAACUUGUCGaCGCUc -3' miRNA: 3'- -CGUGCc---GCGUUGcUUGGACAGC-GUGG- -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 47491 | 0.79 | 0.150348 |
Target: 5'- -gGCGGCGCAGCGAcACCU-UCGcCGCCg -3' miRNA: 3'- cgUGCCGCGUUGCU-UGGAcAGC-GUGG- -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 47969 | 0.68 | 0.663978 |
Target: 5'- cGUGCGGCGCGccagcucgcgcucgGCGAAgCUG-CG-ACCg -3' miRNA: 3'- -CGUGCCGCGU--------------UGCUUgGACaGCgUGG- -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 52077 | 0.7 | 0.515468 |
Target: 5'- cGCACGGCGaacCGGCgGAGCUUcUCGCAUg -3' miRNA: 3'- -CGUGCCGC---GUUG-CUUGGAcAGCGUGg -5' |
|||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 52943 | 0.66 | 0.752696 |
Target: 5'- uGCACGGCuuCAuCGGGC--GUCGUGCCa -3' miRNA: 3'- -CGUGCCGc-GUuGCUUGgaCAGCGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home