Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12194 | 3' | -54.7 | NC_003309.1 | + | 18465 | 0.68 | 0.667257 |
Target: 5'- uGCACGGCuuCGAC-AGCCUGcUGUACUg -3' miRNA: 3'- -CGUGCCGc-GUUGcUUGGACaGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 11990 | 0.68 | 0.667257 |
Target: 5'- uGCcCGcGCGCGGC-AGCCgcgGcgCGCGCCg -3' miRNA: 3'- -CGuGC-CGCGUUGcUUGGa--Ca-GCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 5068 | 0.68 | 0.667257 |
Target: 5'- uGCACgGGCGCGGCG-GCCg---GUGCCg -3' miRNA: 3'- -CGUG-CCGCGUUGCuUGGacagCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 47969 | 0.68 | 0.663978 |
Target: 5'- cGUGCGGCGCGccagcucgcgcucgGCGAAgCUG-CG-ACCg -3' miRNA: 3'- -CGUGCCGCGU--------------UGCUUgGACaGCgUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 1256 | 0.68 | 0.656315 |
Target: 5'- cGUACaGCGCGGCG---CUGUCGUGCUc -3' miRNA: 3'- -CGUGcCGCGUUGCuugGACAGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 33997 | 0.68 | 0.656315 |
Target: 5'- uGCGUGGCGCAguucGCGGuaaGCgUGuUCGCACg -3' miRNA: 3'- -CGUGCCGCGU----UGCU---UGgAC-AGCGUGg -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 4179 | 0.68 | 0.653027 |
Target: 5'- aGCGCGGaUGUcguccgccagcucgAACGcGCCgGUCGCGCUc -3' miRNA: 3'- -CGUGCC-GCG--------------UUGCuUGGaCAGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 47003 | 0.68 | 0.634374 |
Target: 5'- gGCGCGucuuCGCAGCcAACUUGUCGaCGCUc -3' miRNA: 3'- -CGUGCc---GCGUUGcUUGGACAGC-GUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 28509 | 0.68 | 0.623395 |
Target: 5'- cGCGCcggaaucaGGCaGCGGCGAcCCg--CGCGCCa -3' miRNA: 3'- -CGUG--------CCG-CGUUGCUuGGacaGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 10476 | 0.68 | 0.623395 |
Target: 5'- cGCAuCGcGCGCAugccGCGAguucgGCCUG-CGCuGCCg -3' miRNA: 3'- -CGU-GC-CGCGU----UGCU-----UGGACaGCG-UGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 10649 | 0.68 | 0.612424 |
Target: 5'- cGUACGGCauGCccGCGAugCg--CGCGCCg -3' miRNA: 3'- -CGUGCCG--CGu-UGCUugGacaGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 9528 | 0.68 | 0.612424 |
Target: 5'- uGCGCGcCGCGuCGAGCgCg--CGCACCg -3' miRNA: 3'- -CGUGCcGCGUuGCUUG-GacaGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 22427 | 0.68 | 0.611328 |
Target: 5'- aGCGCGGCGCG-CGAgaucuuGCCcaacgcuucggcaUGcCGCugCg -3' miRNA: 3'- -CGUGCCGCGUuGCU------UGG-------------ACaGCGugG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 6285 | 0.69 | 0.60147 |
Target: 5'- gGCAauauCGGCGuCGACGAGuuUGUcCGCAUg -3' miRNA: 3'- -CGU----GCCGC-GUUGCUUggACA-GCGUGg -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 5133 | 0.69 | 0.60147 |
Target: 5'- cCGCGaGCGC-ACGuACCaUG-CGCGCCa -3' miRNA: 3'- cGUGC-CGCGuUGCuUGG-ACaGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 22228 | 0.69 | 0.60147 |
Target: 5'- aGCGCGGCGUuucACGAGaCCcGgcaGCACUc -3' miRNA: 3'- -CGUGCCGCGu--UGCUU-GGaCag-CGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 27477 | 0.69 | 0.579649 |
Target: 5'- aGCGCGGCGaagaGGCGu-UCUaUCGCAUCa -3' miRNA: 3'- -CGUGCCGCg---UUGCuuGGAcAGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 3957 | 0.69 | 0.579649 |
Target: 5'- gGCAcguCGGCGCuccgauGCGGcagccAUCUG-CGCGCCg -3' miRNA: 3'- -CGU---GCCGCGu-----UGCU-----UGGACaGCGUGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 43088 | 0.7 | 0.515468 |
Target: 5'- aCGCGGCGCgAGCGAcucaCUGcCGC-CCg -3' miRNA: 3'- cGUGCCGCG-UUGCUug--GACaGCGuGG- -5' |
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12194 | 3' | -54.7 | NC_003309.1 | + | 52077 | 0.7 | 0.515468 |
Target: 5'- cGCACGGCGaacCGGCgGAGCUUcUCGCAUg -3' miRNA: 3'- -CGUGCCGC---GUUG-CUUGGAcAGCGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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