Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
122 | 3' | -61.3 | AC_000006.1 | + | 20789 | 0.67 | 0.268864 |
Target: 5'- uCCGgucUCGCGGCC--GGCCGUGuugacaauggcGCAGGCc -3' miRNA: 3'- -GGU---GGCGCUGGcgCCGGCAU-----------CGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 10866 | 0.67 | 0.29685 |
Target: 5'- ---gCGCGACUGcCGGUUucgGGCGGGCa -3' miRNA: 3'- ggugGCGCUGGC-GCCGGca-UCGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 17369 | 0.68 | 0.249301 |
Target: 5'- aCCACCGUGG--GCGGCC---GCGGGUc -3' miRNA: 3'- -GGUGGCGCUggCGCCGGcauCGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 17085 | 0.68 | 0.249301 |
Target: 5'- cCCAUgaaCGGCCGCGuGCCGUGccGCGGaGCc -3' miRNA: 3'- -GGUGgc-GCUGGCGC-CGGCAU--CGUC-CG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 15583 | 0.68 | 0.230928 |
Target: 5'- -gGCCGCGGCgGCGGCgGcGGCc-GCu -3' miRNA: 3'- ggUGGCGCUGgCGCCGgCaUCGucCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 19317 | 0.68 | 0.230928 |
Target: 5'- uCCACCaGCGAgggggcuaccaCGCGGCCGUucauguacucGUAGGUg -3' miRNA: 3'- -GGUGG-CGCUg----------GCGCCGGCAu---------CGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 10707 | 0.68 | 0.230928 |
Target: 5'- aCgGCCGCGGUCGCGGUgGUcgccgGGgGGGUg -3' miRNA: 3'- -GgUGGCGCUGGCGCCGgCA-----UCgUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 15474 | 0.68 | 0.237529 |
Target: 5'- -aGCCGCGcGCCGC-GCCGccacugcaccccccGCAGGCa -3' miRNA: 3'- ggUGGCGC-UGGCGcCGGCau------------CGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 12527 | 0.68 | 0.236922 |
Target: 5'- gUACCGCGagGCCauaGGCCaGgcGCAGGUg -3' miRNA: 3'- gGUGGCGC--UGGcg-CCGG-CauCGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 17435 | 0.69 | 0.217063 |
Target: 5'- uCCuCCGCaucuGGCCGCGGCCGcuucucgcccuucGGC-GGCg -3' miRNA: 3'- -GGuGGCG----CUGGCGCCGGCa------------UCGuCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 10970 | 0.69 | 0.192479 |
Target: 5'- gCC-CCGCG-CCGC-GCaCGUGGC-GGCg -3' miRNA: 3'- -GGuGGCGCuGGCGcCG-GCAUCGuCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 11634 | 0.69 | 0.202854 |
Target: 5'- gCCGCCgGCGGCgcccccuaccaGCGcCCGgcGCAGGCu -3' miRNA: 3'- -GGUGG-CGCUGg----------CGCcGGCauCGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 25847 | 0.69 | 0.192479 |
Target: 5'- aUACC-CGAUUGUGGgCGgAGCGGGCa -3' miRNA: 3'- gGUGGcGCUGGCGCCgGCaUCGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 11486 | 0.69 | 0.207679 |
Target: 5'- gUACCGCaacGACCGCauccacaaGGCCGUgagcgcgAGCcGGCg -3' miRNA: 3'- gGUGGCG---CUGGCG--------CCGGCA-------UCGuCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 10502 | 0.7 | 0.173119 |
Target: 5'- uUCGCgGaCGGCCGCGGCg--AGCGGGa -3' miRNA: 3'- -GGUGgC-GCUGGCGCCGgcaUCGUCCg -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 16506 | 0.7 | 0.159758 |
Target: 5'- aCGCCGgGcuACCGCGGCacccgGUAcuacgccagccGCAGGCg -3' miRNA: 3'- gGUGGCgC--UGGCGCCGg----CAU-----------CGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 17021 | 0.7 | 0.168558 |
Target: 5'- uCCGCgGCacGGCaCGCGGCCGUucaUGGGCa -3' miRNA: 3'- -GGUGgCG--CUG-GCGCCGGCAuc-GUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 17586 | 0.7 | 0.163666 |
Target: 5'- aCCGCCGUGcGCCGCGuccccgcccGCCGccaggcccagaacUGGCAGaGCa -3' miRNA: 3'- -GGUGGCGC-UGGCGC---------CGGC-------------AUCGUC-CG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 17360 | 0.7 | 0.164105 |
Target: 5'- gCCGCCgaagggcgagaaGCGGCCGCGGCCagauGCGGa- -3' miRNA: 3'- -GGUGG------------CGCUGGCGCCGGcau-CGUCcg -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 12367 | 0.71 | 0.143393 |
Target: 5'- aCCugCGCgGGCUGUgGGgCGU-GCAGGCg -3' miRNA: 3'- -GGugGCG-CUGGCG-CCgGCAuCGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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