miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
122 3' -61.3 AC_000006.1 + 12240 0.66 0.319288
Target:  5'- aUCAgCGCG-CUGCGGCUGaUGGUgaccgAGGUg -3'
miRNA:   3'- -GGUgGCGCuGGCGCCGGC-AUCG-----UCCG- -5'
122 3' -61.3 AC_000006.1 + 12367 0.71 0.143393
Target:  5'- aCCugCGCgGGCUGUgGGgCGU-GCAGGCg -3'
miRNA:   3'- -GGugGCG-CUGGCG-CCgGCAuCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 12527 0.68 0.236922
Target:  5'- gUACCGCGagGCCauaGGCCaGgcGCAGGUg -3'
miRNA:   3'- gGUGGCGC--UGGcg-CCGG-CauCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 13103 0.71 0.155515
Target:  5'- cCCACCGCGcccucGCuCGCGGgCGUGcGCAccgccuccuGGCg -3'
miRNA:   3'- -GGUGGCGC-----UG-GCGCCgGCAU-CGU---------CCG- -5'
122 3' -61.3 AC_000006.1 + 13346 0.76 0.063917
Target:  5'- gCGCUGUcGCCGCGGCgCGggcGCAGGCu -3'
miRNA:   3'- gGUGGCGcUGGCGCCG-GCau-CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 13856 0.67 0.264855
Target:  5'- cCCACCGCGACCGCucGUcaaaauuuauCGUcugcgugcuagccucGGCGGGg -3'
miRNA:   3'- -GGUGGCGCUGGCGc-CG----------GCA---------------UCGUCCg -5'
122 3' -61.3 AC_000006.1 + 15154 0.73 0.104833
Target:  5'- cCCGuCCGCGuCCGCGGCCacuuccgcgcuccGUGgggcgcuuacaagcGCGGGCg -3'
miRNA:   3'- -GGU-GGCGCuGGCGCCGG-------------CAU--------------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 15268 0.66 0.304191
Target:  5'- gCGCa-CGGCgGCGGCgGUGGCAGuccGCc -3'
miRNA:   3'- gGUGgcGCUGgCGCCGgCAUCGUC---CG- -5'
122 3' -61.3 AC_000006.1 + 15349 0.67 0.282583
Target:  5'- -aACCGCGuCCaCGGUCGaaggGGCGGGa -3'
miRNA:   3'- ggUGGCGCuGGcGCCGGCa---UCGUCCg -5'
122 3' -61.3 AC_000006.1 + 15474 0.68 0.237529
Target:  5'- -aGCCGCGcGCCGC-GCCGccacugcaccccccGCAGGCa -3'
miRNA:   3'- ggUGGCGC-UGGCGcCGGCau------------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 15525 0.67 0.29685
Target:  5'- gCGgCGCGGCgCGCGGCuCGcaucaUGGCccGGCg -3'
miRNA:   3'- gGUgGCGCUG-GCGCCG-GC-----AUCGu-CCG- -5'
122 3' -61.3 AC_000006.1 + 15532 0.77 0.049448
Target:  5'- gCCGCCGCcGCCGCGGCCaucucUAGCaugaccagacccAGGCg -3'
miRNA:   3'- -GGUGGCGcUGGCGCCGGc----AUCG------------UCCG- -5'
122 3' -61.3 AC_000006.1 + 15583 0.68 0.230928
Target:  5'- -gGCCGCGGCgGCGGCgGcGGCc-GCu -3'
miRNA:   3'- ggUGGCGCUGgCGCCGgCaUCGucCG- -5'
122 3' -61.3 AC_000006.1 + 16506 0.7 0.159758
Target:  5'- aCGCCGgGcuACCGCGGCacccgGUAcuacgccagccGCAGGCg -3'
miRNA:   3'- gGUGGCgC--UGGCGCCGg----CAU-----------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 16801 0.77 0.055436
Target:  5'- aCCGCCGcCGGCgGCgGGCCaUGcGCAGGCg -3'
miRNA:   3'- -GGUGGC-GCUGgCG-CCGGcAU-CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 16852 0.67 0.29685
Target:  5'- cCCGCCGcCGGCgGCGGUU----CAGGCc -3'
miRNA:   3'- -GGUGGC-GCUGgCGCCGGcaucGUCCG- -5'
122 3' -61.3 AC_000006.1 + 16913 0.66 0.319288
Target:  5'- gCCGCCGCGAUuaUGgGGauGagcGCGGGCa -3'
miRNA:   3'- -GGUGGCGCUG--GCgCCggCau-CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 17021 0.7 0.168558
Target:  5'- uCCGCgGCacGGCaCGCGGCCGUucaUGGGCa -3'
miRNA:   3'- -GGUGgCG--CUG-GCGCCGGCAuc-GUCCG- -5'
122 3' -61.3 AC_000006.1 + 17085 0.68 0.249301
Target:  5'- cCCAUgaaCGGCCGCGuGCCGUGccGCGGaGCc -3'
miRNA:   3'- -GGUGgc-GCUGGCGC-CGGCAU--CGUC-CG- -5'
122 3' -61.3 AC_000006.1 + 17304 0.66 0.327046
Target:  5'- -aGCCGUcugGAcCCGCGGCCGcccacGguGGUg -3'
miRNA:   3'- ggUGGCG---CU-GGCGCCGGCau---CguCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.