miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
122 3' -61.3 AC_000006.1 + 131 0.66 0.340551
Target:  5'- gUCGCCGCGGaggCGUGGCCuagcccggaagcaaGUcGCGGGg -3'
miRNA:   3'- -GGUGGCGCUg--GCGCCGG--------------CAuCGUCCg -5'
122 3' -61.3 AC_000006.1 + 1891 0.67 0.296123
Target:  5'- aCCACaaaaGCaACCcCGGCUGUAGUgcgcccuGGGCu -3'
miRNA:   3'- -GGUGg---CGcUGGcGCCGGCAUCG-------UCCG- -5'
122 3' -61.3 AC_000006.1 + 3624 0.72 0.13214
Target:  5'- aCCGCCGCaGCCGCGGCagccGCAGccGCc -3'
miRNA:   3'- -GGUGGCGcUGGCGCCGgcauCGUC--CG- -5'
122 3' -61.3 AC_000006.1 + 3686 0.75 0.080147
Target:  5'- gCgGCUGCGgcuGCCGCGGCUGcGGCGGuGCu -3'
miRNA:   3'- -GgUGGCGC---UGGCGCCGGCaUCGUC-CG- -5'
122 3' -61.3 AC_000006.1 + 8118 0.66 0.327046
Target:  5'- cCCGCCGCG-CCGagaucuggaccUGGCUcccgcGCGGGCu -3'
miRNA:   3'- -GGUGGCGCuGGC-----------GCCGGcau--CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 8327 0.66 0.319288
Target:  5'- uCC-CgGCGGCaGCGGCgGUuccggccccGCGGGCa -3'
miRNA:   3'- -GGuGgCGCUGgCGCCGgCAu--------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 8332 0.75 0.073436
Target:  5'- gCACCGCGGCa-CGGUCGUGGCcccgcgcagcuacGGGCu -3'
miRNA:   3'- gGUGGCGCUGgcGCCGGCAUCG-------------UCCG- -5'
122 3' -61.3 AC_000006.1 + 8636 0.75 0.075754
Target:  5'- aUCGCCGCGAcCCGCGcGCUccacgGUGGC-GGCg -3'
miRNA:   3'- -GGUGGCGCU-GGCGC-CGG-----CAUCGuCCG- -5'
122 3' -61.3 AC_000006.1 + 8705 0.66 0.319288
Target:  5'- cUCGCCGCcACCGUGGagCGc-GCGGGUc -3'
miRNA:   3'- -GGUGGCGcUGGCGCCg-GCauCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 9959 0.66 0.334941
Target:  5'- -aAgUGCGGCgGCGGCUGgcGguGaGCg -3'
miRNA:   3'- ggUgGCGCUGgCGCCGGCauCguC-CG- -5'
122 3' -61.3 AC_000006.1 + 10000 0.66 0.327046
Target:  5'- gCCGgCGCGcCCGgGGCCaGguccucgAGCAugaGGCg -3'
miRNA:   3'- -GGUgGCGCuGGCgCCGG-Ca------UCGU---CCG- -5'
122 3' -61.3 AC_000006.1 + 10502 0.7 0.173119
Target:  5'- uUCGCgGaCGGCCGCGGCg--AGCGGGa -3'
miRNA:   3'- -GGUGgC-GCUGGCGCCGgcaUCGUCCg -5'
122 3' -61.3 AC_000006.1 + 10567 0.67 0.275655
Target:  5'- aCCAagucCCGCucGCCGCGGCCGUccgcgaacCGGGUu -3'
miRNA:   3'- -GGU----GGCGc-UGGCGCCGGCAuc------GUCCG- -5'
122 3' -61.3 AC_000006.1 + 10654 1.13 0.000079
Target:  5'- aCCACCGCGACCGCGGCCGUAGCAGGCg -3'
miRNA:   3'- -GGUGGCGCUGGCGCCGGCAUCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 10707 0.68 0.230928
Target:  5'- aCgGCCGCGGUCGCGGUgGUcgccgGGgGGGUg -3'
miRNA:   3'- -GgUGGCGCUGGCGCCGgCA-----UCgUCCG- -5'
122 3' -61.3 AC_000006.1 + 10752 0.67 0.262209
Target:  5'- uCCAUCucUGuCUGUGGCUGUGGCuGGCu -3'
miRNA:   3'- -GGUGGc-GCuGGCGCCGGCAUCGuCCG- -5'
122 3' -61.3 AC_000006.1 + 10866 0.67 0.29685
Target:  5'- ---gCGCGACUGcCGGUUucgGGCGGGCa -3'
miRNA:   3'- ggugGCGCUGGC-GCCGGca-UCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 10970 0.69 0.192479
Target:  5'- gCC-CCGCG-CCGC-GCaCGUGGC-GGCg -3'
miRNA:   3'- -GGuGGCGCuGGCGcCG-GCAUCGuCCG- -5'
122 3' -61.3 AC_000006.1 + 11486 0.69 0.207679
Target:  5'- gUACCGCaacGACCGCauccacaaGGCCGUgagcgcgAGCcGGCg -3'
miRNA:   3'- gGUGGCG---CUGGCG--------CCGGCA-------UCGuCCG- -5'
122 3' -61.3 AC_000006.1 + 11634 0.69 0.202854
Target:  5'- gCCGCCgGCGGCgcccccuaccaGCGcCCGgcGCAGGCu -3'
miRNA:   3'- -GGUGG-CGCUGg----------CGCcGGCauCGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.