miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
122 3' -61.3 AC_000006.1 + 17304 0.66 0.327046
Target:  5'- -aGCCGUcugGAcCCGCGGCCGcccacGguGGUg -3'
miRNA:   3'- ggUGGCG---CU-GGCGCCGGCau---CguCCG- -5'
122 3' -61.3 AC_000006.1 + 10970 0.69 0.192479
Target:  5'- gCC-CCGCG-CCGC-GCaCGUGGC-GGCg -3'
miRNA:   3'- -GGuGGCGCuGGCGcCG-GCAUCGuCCG- -5'
122 3' -61.3 AC_000006.1 + 11486 0.69 0.207679
Target:  5'- gUACCGCaacGACCGCauccacaaGGCCGUgagcgcgAGCcGGCg -3'
miRNA:   3'- gGUGGCG---CUGGCG--------CCGGCA-------UCGuCCG- -5'
122 3' -61.3 AC_000006.1 + 12527 0.68 0.236922
Target:  5'- gUACCGCGagGCCauaGGCCaGgcGCAGGUg -3'
miRNA:   3'- gGUGGCGC--UGGcg-CCGG-CauCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 15474 0.68 0.237529
Target:  5'- -aGCCGCGcGCCGC-GCCGccacugcaccccccGCAGGCa -3'
miRNA:   3'- ggUGGCGC-UGGCGcCGGCau------------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 10866 0.67 0.29685
Target:  5'- ---gCGCGACUGcCGGUUucgGGCGGGCa -3'
miRNA:   3'- ggugGCGCUGGC-GCCGGca-UCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 8327 0.66 0.319288
Target:  5'- uCC-CgGCGGCaGCGGCgGUuccggccccGCGGGCa -3'
miRNA:   3'- -GGuGgCGCUGgCGCCGgCAu--------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 12240 0.66 0.319288
Target:  5'- aUCAgCGCG-CUGCGGCUGaUGGUgaccgAGGUg -3'
miRNA:   3'- -GGUgGCGCuGGCGCCGGC-AUCG-----UCCG- -5'
122 3' -61.3 AC_000006.1 + 10000 0.66 0.327046
Target:  5'- gCCGgCGCGcCCGgGGCCaGguccucgAGCAugaGGCg -3'
miRNA:   3'- -GGUgGCGCuGGCgCCGG-Ca------UCGU---CCG- -5'
122 3' -61.3 AC_000006.1 + 10502 0.7 0.173119
Target:  5'- uUCGCgGaCGGCCGCGGCg--AGCGGGa -3'
miRNA:   3'- -GGUGgC-GCUGGCGCCGgcaUCGUCCg -5'
122 3' -61.3 AC_000006.1 + 17021 0.7 0.168558
Target:  5'- uCCGCgGCacGGCaCGCGGCCGUucaUGGGCa -3'
miRNA:   3'- -GGUGgCG--CUG-GCGCCGGCAuc-GUCCG- -5'
122 3' -61.3 AC_000006.1 + 17360 0.7 0.164105
Target:  5'- gCCGCCgaagggcgagaaGCGGCCGCGGCCagauGCGGa- -3'
miRNA:   3'- -GGUGG------------CGCUGGCGCCGGcau-CGUCcg -5'
122 3' -61.3 AC_000006.1 + 15532 0.77 0.049448
Target:  5'- gCCGCCGCcGCCGCGGCCaucucUAGCaugaccagacccAGGCg -3'
miRNA:   3'- -GGUGGCGcUGGCGCCGGc----AUCG------------UCCG- -5'
122 3' -61.3 AC_000006.1 + 16801 0.77 0.055436
Target:  5'- aCCGCCGcCGGCgGCgGGCCaUGcGCAGGCg -3'
miRNA:   3'- -GGUGGC-GCUGgCG-CCGGcAU-CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 8636 0.75 0.075754
Target:  5'- aUCGCCGCGAcCCGCGcGCUccacgGUGGC-GGCg -3'
miRNA:   3'- -GGUGGCGCU-GGCGC-CGG-----CAUCGuCCG- -5'
122 3' -61.3 AC_000006.1 + 15154 0.73 0.104833
Target:  5'- cCCGuCCGCGuCCGCGGCCacuuccgcgcuccGUGgggcgcuuacaagcGCGGGCg -3'
miRNA:   3'- -GGU-GGCGCuGGCGCCGG-------------CAU--------------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 3624 0.72 0.13214
Target:  5'- aCCGCCGCaGCCGCGGCagccGCAGccGCc -3'
miRNA:   3'- -GGUGGCGcUGGCGCCGgcauCGUC--CG- -5'
122 3' -61.3 AC_000006.1 + 12367 0.71 0.143393
Target:  5'- aCCugCGCgGGCUGUgGGgCGU-GCAGGCg -3'
miRNA:   3'- -GGugGCG-CUGGCG-CCgGCAuCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 16506 0.7 0.159758
Target:  5'- aCGCCGgGcuACCGCGGCacccgGUAcuacgccagccGCAGGCg -3'
miRNA:   3'- gGUGGCgC--UGGCGCCGg----CAU-----------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 17586 0.7 0.163666
Target:  5'- aCCGCCGUGcGCCGCGuccccgcccGCCGccaggcccagaacUGGCAGaGCa -3'
miRNA:   3'- -GGUGGCGC-UGGCGC---------CGGC-------------AUCGUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.