miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
122 3' -61.3 AC_000006.1 + 10654 1.13 0.000079
Target:  5'- aCCACCGCGACCGCGGCCGUAGCAGGCg -3'
miRNA:   3'- -GGUGGCGCUGGCGCCGGCAUCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 15532 0.77 0.049448
Target:  5'- gCCGCCGCcGCCGCGGCCaucucUAGCaugaccagacccAGGCg -3'
miRNA:   3'- -GGUGGCGcUGGCGCCGGc----AUCG------------UCCG- -5'
122 3' -61.3 AC_000006.1 + 16801 0.77 0.055436
Target:  5'- aCCGCCGcCGGCgGCgGGCCaUGcGCAGGCg -3'
miRNA:   3'- -GGUGGC-GCUGgCG-CCGGcAU-CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 13346 0.76 0.063917
Target:  5'- gCGCUGUcGCCGCGGCgCGggcGCAGGCu -3'
miRNA:   3'- gGUGGCGcUGGCGCCG-GCau-CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 8332 0.75 0.073436
Target:  5'- gCACCGCGGCa-CGGUCGUGGCcccgcgcagcuacGGGCu -3'
miRNA:   3'- gGUGGCGCUGgcGCCGGCAUCG-------------UCCG- -5'
122 3' -61.3 AC_000006.1 + 8636 0.75 0.075754
Target:  5'- aUCGCCGCGAcCCGCGcGCUccacgGUGGC-GGCg -3'
miRNA:   3'- -GGUGGCGCU-GGCGC-CGG-----CAUCGuCCG- -5'
122 3' -61.3 AC_000006.1 + 3686 0.75 0.080147
Target:  5'- gCgGCUGCGgcuGCCGCGGCUGcGGCGGuGCu -3'
miRNA:   3'- -GgUGGCGC---UGGCGCCGGCaUCGUC-CG- -5'
122 3' -61.3 AC_000006.1 + 15154 0.73 0.104833
Target:  5'- cCCGuCCGCGuCCGCGGCCacuuccgcgcuccGUGgggcgcuuacaagcGCGGGCg -3'
miRNA:   3'- -GGU-GGCGCuGGCGCCGG-------------CAU--------------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 3624 0.72 0.13214
Target:  5'- aCCGCCGCaGCCGCGGCagccGCAGccGCc -3'
miRNA:   3'- -GGUGGCGcUGGCGCCGgcauCGUC--CG- -5'
122 3' -61.3 AC_000006.1 + 24929 0.71 0.139548
Target:  5'- aCCGCCG-GGCUGCGGCgCGgaUGGUGcGGCg -3'
miRNA:   3'- -GGUGGCgCUGGCGCCG-GC--AUCGU-CCG- -5'
122 3' -61.3 AC_000006.1 + 12367 0.71 0.143393
Target:  5'- aCCugCGCgGGCUGUgGGgCGU-GCAGGCg -3'
miRNA:   3'- -GGugGCG-CUGGCG-CCgGCAuCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 17531 0.71 0.147334
Target:  5'- aCAcCCGUGGCCaGUGGCgcgaugaugcgCGUGGUGGGCa -3'
miRNA:   3'- gGU-GGCGCUGG-CGCCG-----------GCAUCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 13103 0.71 0.155515
Target:  5'- cCCACCGCGcccucGCuCGCGGgCGUGcGCAccgccuccuGGCg -3'
miRNA:   3'- -GGUGGCGC-----UG-GCGCCgGCAU-CGU---------CCG- -5'
122 3' -61.3 AC_000006.1 + 16506 0.7 0.159758
Target:  5'- aCGCCGgGcuACCGCGGCacccgGUAcuacgccagccGCAGGCg -3'
miRNA:   3'- gGUGGCgC--UGGCGCCGg----CAU-----------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 17586 0.7 0.163666
Target:  5'- aCCGCCGUGcGCCGCGuccccgcccGCCGccaggcccagaacUGGCAGaGCa -3'
miRNA:   3'- -GGUGGCGC-UGGCGC---------CGGC-------------AUCGUC-CG- -5'
122 3' -61.3 AC_000006.1 + 17360 0.7 0.164105
Target:  5'- gCCGCCgaagggcgagaaGCGGCCGCGGCCagauGCGGa- -3'
miRNA:   3'- -GGUGG------------CGCUGGCGCCGGcau-CGUCcg -5'
122 3' -61.3 AC_000006.1 + 17021 0.7 0.168558
Target:  5'- uCCGCgGCacGGCaCGCGGCCGUucaUGGGCa -3'
miRNA:   3'- -GGUGgCG--CUG-GCGCCGGCAuc-GUCCG- -5'
122 3' -61.3 AC_000006.1 + 10502 0.7 0.173119
Target:  5'- uUCGCgGaCGGCCGCGGCg--AGCGGGa -3'
miRNA:   3'- -GGUGgC-GCUGGCGCCGgcaUCGUCCg -5'
122 3' -61.3 AC_000006.1 + 10970 0.69 0.192479
Target:  5'- gCC-CCGCG-CCGC-GCaCGUGGC-GGCg -3'
miRNA:   3'- -GGuGGCGCuGGCGcCG-GCAUCGuCCG- -5'
122 3' -61.3 AC_000006.1 + 25847 0.69 0.192479
Target:  5'- aUACC-CGAUUGUGGgCGgAGCGGGCa -3'
miRNA:   3'- gGUGGcGCUGGCGCCgGCaUCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.