miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
122 3' -61.3 AC_000006.1 + 17636 0.66 0.334941
Target:  5'- aCGCgGCGcACgGCGGUCGccaccggAGgGGGCu -3'
miRNA:   3'- gGUGgCGC-UGgCGCCGGCa------UCgUCCG- -5'
122 3' -61.3 AC_000006.1 + 10707 0.68 0.230928
Target:  5'- aCgGCCGCGGUCGCGGUgGUcgccgGGgGGGUg -3'
miRNA:   3'- -GgUGGCGCUGGCGCCGgCA-----UCgUCCG- -5'
122 3' -61.3 AC_000006.1 + 19317 0.68 0.230928
Target:  5'- uCCACCaGCGAgggggcuaccaCGCGGCCGUucauguacucGUAGGUg -3'
miRNA:   3'- -GGUGG-CGCUg----------GCGCCGGCAu---------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 13346 0.76 0.063917
Target:  5'- gCGCUGUcGCCGCGGCgCGggcGCAGGCu -3'
miRNA:   3'- gGUGGCGcUGGCGCCG-GCau-CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 15268 0.66 0.304191
Target:  5'- gCGCa-CGGCgGCGGCgGUGGCAGuccGCc -3'
miRNA:   3'- gGUGgcGCUGgCGCCGgCAUCGUC---CG- -5'
122 3' -61.3 AC_000006.1 + 24624 0.66 0.304191
Target:  5'- -gGCCGUGAgauCCGCGuGCU---GCGGGCg -3'
miRNA:   3'- ggUGGCGCU---GGCGC-CGGcauCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 15525 0.67 0.29685
Target:  5'- gCGgCGCGGCgCGCGGCuCGcaucaUGGCccGGCg -3'
miRNA:   3'- gGUgGCGCUG-GCGCCG-GC-----AUCGu-CCG- -5'
122 3' -61.3 AC_000006.1 + 1891 0.67 0.296123
Target:  5'- aCCACaaaaGCaACCcCGGCUGUAGUgcgcccuGGGCu -3'
miRNA:   3'- -GGUGg---CGcUGGcGCCGGCAUCG-------UCCG- -5'
122 3' -61.3 AC_000006.1 + 10567 0.67 0.275655
Target:  5'- aCCAagucCCGCucGCCGCGGCCGUccgcgaacCGGGUu -3'
miRNA:   3'- -GGU----GGCGc-UGGCGCCGGCAuc------GUCCG- -5'
122 3' -61.3 AC_000006.1 + 17369 0.68 0.249301
Target:  5'- aCCACCGUGG--GCGGCC---GCGGGUc -3'
miRNA:   3'- -GGUGGCGCUggCGCCGGcauCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 13856 0.67 0.264855
Target:  5'- cCCACCGCGACCGCucGUcaaaauuuauCGUcugcgugcuagccucGGCGGGg -3'
miRNA:   3'- -GGUGGCGCUGGCGc-CG----------GCA---------------UCGUCCg -5'
122 3' -61.3 AC_000006.1 + 15349 0.67 0.282583
Target:  5'- -aACCGCGuCCaCGGUCGaaggGGCGGGa -3'
miRNA:   3'- ggUGGCGCuGGcGCCGGCa---UCGUCCg -5'
122 3' -61.3 AC_000006.1 + 8118 0.66 0.327046
Target:  5'- cCCGCCGCG-CCGagaucuggaccUGGCUcccgcGCGGGCu -3'
miRNA:   3'- -GGUGGCGCuGGC-----------GCCGGcau--CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 10752 0.67 0.262209
Target:  5'- uCCAUCucUGuCUGUGGCUGUGGCuGGCu -3'
miRNA:   3'- -GGUGGc-GCuGGCGCCGGCAUCGuCCG- -5'
122 3' -61.3 AC_000006.1 + 8705 0.66 0.319288
Target:  5'- cUCGCCGCcACCGUGGagCGc-GCGGGUc -3'
miRNA:   3'- -GGUGGCGcUGGCGCCg-GCauCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 23271 0.67 0.289647
Target:  5'- gUCGgCGCGGgUGCGGuuGgcgcGGCAGGa -3'
miRNA:   3'- -GGUgGCGCUgGCGCCggCa---UCGUCCg -5'
122 3' -61.3 AC_000006.1 + 17085 0.68 0.249301
Target:  5'- cCCAUgaaCGGCCGCGuGCCGUGccGCGGaGCc -3'
miRNA:   3'- -GGUGgc-GCUGGCGC-CGGCAU--CGUC-CG- -5'
122 3' -61.3 AC_000006.1 + 15583 0.68 0.230928
Target:  5'- -gGCCGCGGCgGCGGCgGcGGCc-GCu -3'
miRNA:   3'- ggUGGCGCUGgCGCCGgCaUCGucCG- -5'
122 3' -61.3 AC_000006.1 + 16913 0.66 0.319288
Target:  5'- gCCGCCGCGAUuaUGgGGauGagcGCGGGCa -3'
miRNA:   3'- -GGUGGCGCUG--GCgCCggCau-CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 16852 0.67 0.29685
Target:  5'- cCCGCCGcCGGCgGCGGUU----CAGGCc -3'
miRNA:   3'- -GGUGGC-GCUGgCGCCGGcaucGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.