miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
122 3' -61.3 AC_000006.1 + 25847 0.69 0.192479
Target:  5'- aUACC-CGAUUGUGGgCGgAGCGGGCa -3'
miRNA:   3'- gGUGGcGCUGGCGCCgGCaUCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 24929 0.71 0.139548
Target:  5'- aCCGCCG-GGCUGCGGCgCGgaUGGUGcGGCg -3'
miRNA:   3'- -GGUGGCgCUGGCGCCG-GC--AUCGU-CCG- -5'
122 3' -61.3 AC_000006.1 + 24624 0.66 0.304191
Target:  5'- -gGCCGUGAgauCCGCGuGCU---GCGGGCg -3'
miRNA:   3'- ggUGGCGCU---GGCGC-CGGcauCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 23271 0.67 0.289647
Target:  5'- gUCGgCGCGGgUGCGGuuGgcgcGGCAGGa -3'
miRNA:   3'- -GGUgGCGCUgGCGCCggCa---UCGUCCg -5'
122 3' -61.3 AC_000006.1 + 20789 0.67 0.268864
Target:  5'- uCCGgucUCGCGGCC--GGCCGUGuugacaauggcGCAGGCc -3'
miRNA:   3'- -GGU---GGCGCUGGcgCCGGCAU-----------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 19317 0.68 0.230928
Target:  5'- uCCACCaGCGAgggggcuaccaCGCGGCCGUucauguacucGUAGGUg -3'
miRNA:   3'- -GGUGG-CGCUg----------GCGCCGGCAu---------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 17636 0.66 0.334941
Target:  5'- aCGCgGCGcACgGCGGUCGccaccggAGgGGGCu -3'
miRNA:   3'- gGUGgCGC-UGgCGCCGGCa------UCgUCCG- -5'
122 3' -61.3 AC_000006.1 + 17586 0.7 0.163666
Target:  5'- aCCGCCGUGcGCCGCGuccccgcccGCCGccaggcccagaacUGGCAGaGCa -3'
miRNA:   3'- -GGUGGCGC-UGGCGC---------CGGC-------------AUCGUC-CG- -5'
122 3' -61.3 AC_000006.1 + 17531 0.71 0.147334
Target:  5'- aCAcCCGUGGCCaGUGGCgcgaugaugcgCGUGGUGGGCa -3'
miRNA:   3'- gGU-GGCGCUGG-CGCCG-----------GCAUCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 17435 0.69 0.217063
Target:  5'- uCCuCCGCaucuGGCCGCGGCCGcuucucgcccuucGGC-GGCg -3'
miRNA:   3'- -GGuGGCG----CUGGCGCCGGCa------------UCGuCCG- -5'
122 3' -61.3 AC_000006.1 + 17369 0.68 0.249301
Target:  5'- aCCACCGUGG--GCGGCC---GCGGGUc -3'
miRNA:   3'- -GGUGGCGCUggCGCCGGcauCGUCCG- -5'
122 3' -61.3 AC_000006.1 + 17360 0.7 0.164105
Target:  5'- gCCGCCgaagggcgagaaGCGGCCGCGGCCagauGCGGa- -3'
miRNA:   3'- -GGUGG------------CGCUGGCGCCGGcau-CGUCcg -5'
122 3' -61.3 AC_000006.1 + 17304 0.66 0.327046
Target:  5'- -aGCCGUcugGAcCCGCGGCCGcccacGguGGUg -3'
miRNA:   3'- ggUGGCG---CU-GGCGCCGGCau---CguCCG- -5'
122 3' -61.3 AC_000006.1 + 17085 0.68 0.249301
Target:  5'- cCCAUgaaCGGCCGCGuGCCGUGccGCGGaGCc -3'
miRNA:   3'- -GGUGgc-GCUGGCGC-CGGCAU--CGUC-CG- -5'
122 3' -61.3 AC_000006.1 + 17021 0.7 0.168558
Target:  5'- uCCGCgGCacGGCaCGCGGCCGUucaUGGGCa -3'
miRNA:   3'- -GGUGgCG--CUG-GCGCCGGCAuc-GUCCG- -5'
122 3' -61.3 AC_000006.1 + 16913 0.66 0.319288
Target:  5'- gCCGCCGCGAUuaUGgGGauGagcGCGGGCa -3'
miRNA:   3'- -GGUGGCGCUG--GCgCCggCau-CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 16852 0.67 0.29685
Target:  5'- cCCGCCGcCGGCgGCGGUU----CAGGCc -3'
miRNA:   3'- -GGUGGC-GCUGgCGCCGGcaucGUCCG- -5'
122 3' -61.3 AC_000006.1 + 16801 0.77 0.055436
Target:  5'- aCCGCCGcCGGCgGCgGGCCaUGcGCAGGCg -3'
miRNA:   3'- -GGUGGC-GCUGgCG-CCGGcAU-CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 16506 0.7 0.159758
Target:  5'- aCGCCGgGcuACCGCGGCacccgGUAcuacgccagccGCAGGCg -3'
miRNA:   3'- gGUGGCgC--UGGCGCCGg----CAU-----------CGUCCG- -5'
122 3' -61.3 AC_000006.1 + 15583 0.68 0.230928
Target:  5'- -gGCCGCGGCgGCGGCgGcGGCc-GCu -3'
miRNA:   3'- ggUGGCGCUGgCGCCGgCaUCGucCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.