miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12209 5' -55.2 NC_003309.1 + 9539 0.73 0.307163
Target:  5'- gCGGAUCGAa--CUGCGCGCCG-CGUc -3'
miRNA:   3'- aGUCUAGCUgacGAUGCGCGGCuGCA- -5'
12209 5' -55.2 NC_003309.1 + 48717 0.73 0.347014
Target:  5'- aUCAGGUCGACUGCcaaugccGCGUGCgCGAUc- -3'
miRNA:   3'- -AGUCUAGCUGACGa------UGCGCG-GCUGca -5'
12209 5' -55.2 NC_003309.1 + 15329 0.72 0.355415
Target:  5'- gUCGGcgaUGGCUGCUGCGCGUCgGAUGUc -3'
miRNA:   3'- -AGUCua-GCUGACGAUGCGCGG-CUGCA- -5'
12209 5' -55.2 NC_003309.1 + 40346 0.72 0.381466
Target:  5'- gCAGAUCGAUuggUGCUACGCcCUGAuCGUu -3'
miRNA:   3'- aGUCUAGCUG---ACGAUGCGcGGCU-GCA- -5'
12209 5' -55.2 NC_003309.1 + 13225 0.72 0.381466
Target:  5'- -gAGAUCccGCcGUUGCGCGCCGGCGa -3'
miRNA:   3'- agUCUAGc-UGaCGAUGCGCGGCUGCa -5'
12209 5' -55.2 NC_003309.1 + 19044 0.71 0.418127
Target:  5'- aUCGuGAUCGGCcguUGCUggaucuGCGCGCCGuCGUc -3'
miRNA:   3'- -AGU-CUAGCUG---ACGA------UGCGCGGCuGCA- -5'
12209 5' -55.2 NC_003309.1 + 4860 0.71 0.427622
Target:  5'- gCuGAUUGACgGCUGCGCGUucgCGGCGa -3'
miRNA:   3'- aGuCUAGCUGaCGAUGCGCG---GCUGCa -5'
12209 5' -55.2 NC_003309.1 + 44194 0.7 0.486096
Target:  5'- uUCGGAUUGACgcccGCgGCGCGCugccgcuCGGCGUa -3'
miRNA:   3'- -AGUCUAGCUGa---CGaUGCGCG-------GCUGCA- -5'
12209 5' -55.2 NC_003309.1 + 7235 0.69 0.507817
Target:  5'- aCAGGUCGAgauacCcGCguuUGCGCGCCGGCa- -3'
miRNA:   3'- aGUCUAGCU-----GaCG---AUGCGCGGCUGca -5'
12209 5' -55.2 NC_003309.1 + 45764 0.68 0.582776
Target:  5'- uUCGGGuUCGGC-GCcugaugUACGCGCCGGuCGUa -3'
miRNA:   3'- -AGUCU-AGCUGaCG------AUGCGCGGCU-GCA- -5'
12209 5' -55.2 NC_003309.1 + 8193 0.67 0.626675
Target:  5'- cUCAGAUCGACgaacaccagaucUGC--CGCGUCGAgGUc -3'
miRNA:   3'- -AGUCUAGCUG------------ACGauGCGCGGCUgCA- -5'
12209 5' -55.2 NC_003309.1 + 34487 0.66 0.692455
Target:  5'- --uGAUCGGCUGC-ACGCcGCaGACGc -3'
miRNA:   3'- aguCUAGCUGACGaUGCG-CGgCUGCa -5'
12209 5' -55.2 NC_003309.1 + 25558 0.66 0.692455
Target:  5'- cCGGGUCGGgUGUaGCGgGCCGAa-- -3'
miRNA:   3'- aGUCUAGCUgACGaUGCgCGGCUgca -5'
12209 5' -55.2 NC_003309.1 + 8552 0.66 0.692455
Target:  5'- --cGAUCgGGgaGUUACGcCGCCGGCGg -3'
miRNA:   3'- aguCUAG-CUgaCGAUGC-GCGGCUGCa -5'
12209 5' -55.2 NC_003309.1 + 14654 0.66 0.703277
Target:  5'- -uGGAaaucCGAaa-CUGCGCGCCGACGg -3'
miRNA:   3'- agUCUa---GCUgacGAUGCGCGGCUGCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.