Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12209 | 5' | -55.2 | NC_003309.1 | + | 4860 | 0.71 | 0.427622 |
Target: 5'- gCuGAUUGACgGCUGCGCGUucgCGGCGa -3' miRNA: 3'- aGuCUAGCUGaCGAUGCGCG---GCUGCa -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 7235 | 0.69 | 0.507817 |
Target: 5'- aCAGGUCGAgauacCcGCguuUGCGCGCCGGCa- -3' miRNA: 3'- aGUCUAGCU-----GaCG---AUGCGCGGCUGca -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 8193 | 0.67 | 0.626675 |
Target: 5'- cUCAGAUCGACgaacaccagaucUGC--CGCGUCGAgGUc -3' miRNA: 3'- -AGUCUAGCUG------------ACGauGCGCGGCUgCA- -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 8552 | 0.66 | 0.692455 |
Target: 5'- --cGAUCgGGgaGUUACGcCGCCGGCGg -3' miRNA: 3'- aguCUAG-CUgaCGAUGC-GCGGCUGCa -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 9539 | 0.73 | 0.307163 |
Target: 5'- gCGGAUCGAa--CUGCGCGCCG-CGUc -3' miRNA: 3'- aGUCUAGCUgacGAUGCGCGGCuGCA- -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 13225 | 0.72 | 0.381466 |
Target: 5'- -gAGAUCccGCcGUUGCGCGCCGGCGa -3' miRNA: 3'- agUCUAGc-UGaCGAUGCGCGGCUGCa -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 14654 | 0.66 | 0.703277 |
Target: 5'- -uGGAaaucCGAaa-CUGCGCGCCGACGg -3' miRNA: 3'- agUCUa---GCUgacGAUGCGCGGCUGCa -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 15329 | 0.72 | 0.355415 |
Target: 5'- gUCGGcgaUGGCUGCUGCGCGUCgGAUGUc -3' miRNA: 3'- -AGUCua-GCUGACGAUGCGCGG-CUGCA- -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 19044 | 0.71 | 0.418127 |
Target: 5'- aUCGuGAUCGGCcguUGCUggaucuGCGCGCCGuCGUc -3' miRNA: 3'- -AGU-CUAGCUG---ACGA------UGCGCGGCuGCA- -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 25558 | 0.66 | 0.692455 |
Target: 5'- cCGGGUCGGgUGUaGCGgGCCGAa-- -3' miRNA: 3'- aGUCUAGCUgACGaUGCgCGGCUgca -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 34487 | 0.66 | 0.692455 |
Target: 5'- --uGAUCGGCUGC-ACGCcGCaGACGc -3' miRNA: 3'- aguCUAGCUGACGaUGCG-CGgCUGCa -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 40346 | 0.72 | 0.381466 |
Target: 5'- gCAGAUCGAUuggUGCUACGCcCUGAuCGUu -3' miRNA: 3'- aGUCUAGCUG---ACGAUGCGcGGCU-GCA- -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 44194 | 0.7 | 0.486096 |
Target: 5'- uUCGGAUUGACgcccGCgGCGCGCugccgcuCGGCGUa -3' miRNA: 3'- -AGUCUAGCUGa---CGaUGCGCG-------GCUGCA- -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 45764 | 0.68 | 0.582776 |
Target: 5'- uUCGGGuUCGGC-GCcugaugUACGCGCCGGuCGUa -3' miRNA: 3'- -AGUCU-AGCUGaCG------AUGCGCGGCU-GCA- -5' |
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12209 | 5' | -55.2 | NC_003309.1 | + | 48717 | 0.73 | 0.347014 |
Target: 5'- aUCAGGUCGACUGCcaaugccGCGUGCgCGAUc- -3' miRNA: 3'- -AGUCUAGCUGACGa------UGCGCG-GCUGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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