miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12211 3' -59.1 NC_003309.1 + 53289 0.66 0.500147
Target:  5'- gGCGgGCcACcacCACGucaccGCAACCGCUCGc -3'
miRNA:   3'- gCGCgCGcUGu--GUGC-----CGUUGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 53246 0.75 0.146138
Target:  5'- uCGcCGCGUGACAguCACGGCAgAUCGCUUGc -3'
miRNA:   3'- -GC-GCGCGCUGU--GUGCCGU-UGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 52488 0.67 0.451096
Target:  5'- aCGCGCaagccaaggcaaGCGACG-ACGGCcGCCGCa-- -3'
miRNA:   3'- -GCGCG------------CGCUGUgUGCCGuUGGCGagc -5'
12211 3' -59.1 NC_003309.1 + 49066 0.69 0.345265
Target:  5'- -aCGCGUGACACGCGacGCAACCGg--- -3'
miRNA:   3'- gcGCGCGCUGUGUGC--CGUUGGCgagc -5'
12211 3' -59.1 NC_003309.1 + 48696 0.68 0.432224
Target:  5'- gCGUGCGCGAUcgcuGCGCuGCGcucccgauuCCGCUCa -3'
miRNA:   3'- -GCGCGCGCUG----UGUGcCGUu--------GGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 48217 0.66 0.541017
Target:  5'- cCGaGCGCcGCugACGcGCGAUCaGCUCGa -3'
miRNA:   3'- -GCgCGCGcUGugUGC-CGUUGG-CGAGC- -5'
12211 3' -59.1 NC_003309.1 + 47831 0.67 0.480226
Target:  5'- uCGCGCGgGAUgucguugaaguAC-CGGUAcaACUGCUCGu -3'
miRNA:   3'- -GCGCGCgCUG-----------UGuGCCGU--UGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 47014 0.66 0.539981
Target:  5'- aCGCG-GCGAUugGCGcgucuucGCAGCCaacuugucgacGCUCGg -3'
miRNA:   3'- -GCGCgCGCUGugUGC-------CGUUGG-----------CGAGC- -5'
12211 3' -59.1 NC_003309.1 + 45881 0.82 0.049699
Target:  5'- uCGCGCGCGuugauCACGCGGCGACgGCcgUCGa -3'
miRNA:   3'- -GCGCGCGCu----GUGUGCCGUUGgCG--AGC- -5'
12211 3' -59.1 NC_003309.1 + 44185 0.72 0.222193
Target:  5'- aCGCcCGCGGCGCGCu---GCCGCUCGg -3'
miRNA:   3'- -GCGcGCGCUGUGUGccguUGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 43515 0.66 0.520425
Target:  5'- uCGCGCGCaucaGguCGCGGCAGucuCCGCggugCGa -3'
miRNA:   3'- -GCGCGCGc---UguGUGCCGUU---GGCGa---GC- -5'
12211 3' -59.1 NC_003309.1 + 40103 0.72 0.233778
Target:  5'- uCGCGCccaugcaauGCGGCACGCGGCccgguuGaaGCUCGa -3'
miRNA:   3'- -GCGCG---------CGCUGUGUGCCGu-----UggCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 39813 0.68 0.38714
Target:  5'- aCGCGUGCGAUgaaGCACauCGGCCGCggCGa -3'
miRNA:   3'- -GCGCGCGCUG---UGUGccGUUGGCGa-GC- -5'
12211 3' -59.1 NC_003309.1 + 39467 0.66 0.530684
Target:  5'- uCGUGCaGCGugGacUACuGCGGCCuGCUCGa -3'
miRNA:   3'- -GCGCG-CGCugU--GUGcCGUUGG-CGAGC- -5'
12211 3' -59.1 NC_003309.1 + 35735 0.67 0.470412
Target:  5'- uCGCaacCGCGACACGCG--AAUCGCUCu -3'
miRNA:   3'- -GCGc--GCGCUGUGUGCcgUUGGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 35367 0.69 0.377645
Target:  5'- uGCGcCGCGaucGCACACGGCAuacaacggagccgACCGggCGc -3'
miRNA:   3'- gCGC-GCGC---UGUGUGCCGU-------------UGGCgaGC- -5'
12211 3' -59.1 NC_003309.1 + 35132 0.68 0.404801
Target:  5'- -uCGUGCGAUGCGCuGGacgAACUGCUCGa -3'
miRNA:   3'- gcGCGCGCUGUGUG-CCg--UUGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 33171 0.71 0.264966
Target:  5'- uGCGCugacUGACGaccaACGGCAAgCGCUCGg -3'
miRNA:   3'- gCGCGc---GCUGUg---UGCCGUUgGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 32599 0.69 0.353374
Target:  5'- aGCGCGgacggcaGACGCugGGCAAaggcaagcacCUGCUCu -3'
miRNA:   3'- gCGCGCg------CUGUGugCCGUU----------GGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 32391 0.66 0.500147
Target:  5'- aGCG-GCGACGgcucgcUGCGGCGGCCGUg-- -3'
miRNA:   3'- gCGCgCGCUGU------GUGCCGUUGGCGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.