miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12211 3' -59.1 NC_003309.1 + 3142 0.66 0.541017
Target:  5'- aGCGC-CGGgGCAUccuuCGGCCGCUCGa -3'
miRNA:   3'- gCGCGcGCUgUGUGcc--GUUGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 5562 0.67 0.480226
Target:  5'- uCGCGCGCGcCGauCGCGGCGGugaggUCGC-CGa -3'
miRNA:   3'- -GCGCGCGCuGU--GUGCCGUU-----GGCGaGC- -5'
12211 3' -59.1 NC_003309.1 + 6549 0.68 0.408394
Target:  5'- aGCGCGCcuuGCGuauCGCGGCGccagccuugcucucgGCCGCUUGc -3'
miRNA:   3'- gCGCGCGc--UGU---GUGCCGU---------------UGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 6749 0.75 0.134822
Target:  5'- gGCGCGCG-CAUACGGCcAACgUGCUUGa -3'
miRNA:   3'- gCGCGCGCuGUGUGCCG-UUG-GCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 7221 0.66 0.530684
Target:  5'- cCGCGUuuGCG-CGC-CGGCAguACCGC-CGu -3'
miRNA:   3'- -GCGCG--CGCuGUGuGCCGU--UGGCGaGC- -5'
12211 3' -59.1 NC_003309.1 + 8531 0.74 0.158313
Target:  5'- gGCG-GCGGCACGagcuuCGGCGcACCGCUCa -3'
miRNA:   3'- gCGCgCGCUGUGU-----GCCGU-UGGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 9514 0.68 0.403906
Target:  5'- aGCGCGCGcaccgugaccuGCACGCuugcggcguucgaGGCAaacGCCGCaUCGc -3'
miRNA:   3'- gCGCGCGC-----------UGUGUG-------------CCGU---UGGCG-AGC- -5'
12211 3' -59.1 NC_003309.1 + 9641 0.66 0.510244
Target:  5'- -aCGCGUGACGauccgaaGGCGAUUGCUCa -3'
miRNA:   3'- gcGCGCGCUGUgug----CCGUUGGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 9694 0.71 0.264966
Target:  5'- uCGCGCGCGAUGCGCaGCAcguCGUUCu -3'
miRNA:   3'- -GCGCGCGCUGUGUGcCGUug-GCGAGc -5'
12211 3' -59.1 NC_003309.1 + 9958 0.71 0.252103
Target:  5'- cCGCGCGCGAuagcauccgcgaCACcCGGCAACUcUUCGa -3'
miRNA:   3'- -GCGCGCGCU------------GUGuGCCGUUGGcGAGC- -5'
12211 3' -59.1 NC_003309.1 + 10598 0.68 0.422962
Target:  5'- uCGCGCGUGcCGuCGCGaCAugCGCUUGc -3'
miRNA:   3'- -GCGCGCGCuGU-GUGCcGUugGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 10702 0.74 0.18065
Target:  5'- gGCGCGCucGAgcuccugcUGCGCGGCGGCCGuCUCGc -3'
miRNA:   3'- gCGCGCG--CU--------GUGUGCCGUUGGC-GAGC- -5'
12211 3' -59.1 NC_003309.1 + 10861 0.67 0.451096
Target:  5'- gCGCGCcuGCGugGCAaGcGCGACaucaCGCUCGg -3'
miRNA:   3'- -GCGCG--CGCugUGUgC-CGUUG----GCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 11213 0.85 0.028137
Target:  5'- cCGCGCGCGACGCcuccugcuucguGC-GCAGCCGCUCGg -3'
miRNA:   3'- -GCGCGCGCUGUG------------UGcCGUUGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 11518 0.67 0.451096
Target:  5'- gCGCGCccuucuGCGACGCGaGGCucGCCGUgUCGa -3'
miRNA:   3'- -GCGCG------CGCUGUGUgCCGu-UGGCG-AGC- -5'
12211 3' -59.1 NC_003309.1 + 11987 0.85 0.027343
Target:  5'- cCGCGCGCGGCAgcCGCGGCGcgcGCCGCgUCGg -3'
miRNA:   3'- -GCGCGCGCUGU--GUGCCGU---UGGCG-AGC- -5'
12211 3' -59.1 NC_003309.1 + 12622 0.72 0.227344
Target:  5'- uCGCGCGCGACcuGCuccgccuCGGCcguguugAugCGCUCGa -3'
miRNA:   3'- -GCGCGCGCUG--UGu------GCCG-------UugGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 13108 0.72 0.226191
Target:  5'- gCGCGCacgcccggcuGCGACACcacuGCGGCGcggaccacgaacucGCCGUUCGa -3'
miRNA:   3'- -GCGCG----------CGCUGUG----UGCCGU--------------UGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 15985 0.69 0.33729
Target:  5'- cCGUcgGCGCGGCugcgagguuucgGCAgGGCAcguacgucucGCCGCUCGc -3'
miRNA:   3'- -GCG--CGCGCUG------------UGUgCCGU----------UGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 16477 0.69 0.353374
Target:  5'- aCGCcCGCGugAUuCGGCAcGCCGUUCu -3'
miRNA:   3'- -GCGcGCGCugUGuGCCGU-UGGCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.