miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12211 3' -59.1 NC_003309.1 + 16536 0.71 0.278356
Target:  5'- cCGCGCGCGuCGauaGGCGACCGUg-- -3'
miRNA:   3'- -GCGCGCGCuGUgugCCGUUGGCGagc -5'
12211 3' -59.1 NC_003309.1 + 17514 0.65 0.550373
Target:  5'- gCGCGUcggacgucaGCGGCACGCcgacgccGGCcuCaCGCUCGa -3'
miRNA:   3'- -GCGCG---------CGCUGUGUG-------CCGuuG-GCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 17748 0.74 0.175969
Target:  5'- uCGCGCGCGGCAgcucgaucCGauGCGAgCGCUCGu -3'
miRNA:   3'- -GCGCGCGCUGU--------GUgcCGUUgGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 17793 0.67 0.474326
Target:  5'- gCGCGUucgGCGugAUACGGCGcacacggaucagccaGCCGUUUu -3'
miRNA:   3'- -GCGCG---CGCugUGUGCCGU---------------UGGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 18797 0.66 0.510244
Target:  5'- gCGCcuGCGCGAUGCccgACGGCAagAUCGC-CGu -3'
miRNA:   3'- -GCG--CGCGCUGUG---UGCCGU--UGGCGaGC- -5'
12211 3' -59.1 NC_003309.1 + 19958 0.75 0.138501
Target:  5'- uGCGCGCGAUccgcuucgACGCGcGCGAUCGCUUc -3'
miRNA:   3'- gCGCGCGCUG--------UGUGC-CGUUGGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 21964 0.67 0.49014
Target:  5'- cCGCGCGCGGCAuucauCACGcGUGAagCGCUgGc -3'
miRNA:   3'- -GCGCGCGCUGU-----GUGC-CGUUg-GCGAgC- -5'
12211 3' -59.1 NC_003309.1 + 22084 0.66 0.530684
Target:  5'- gGCGCGCGGCcCGauguuguaGGCGAa-GCUCa -3'
miRNA:   3'- gCGCGCGCUGuGUg-------CCGUUggCGAGc -5'
12211 3' -59.1 NC_003309.1 + 22148 0.69 0.356656
Target:  5'- -uCGCGCGACACGCGccccgccagucgcccGCAuugaACCGcCUCGc -3'
miRNA:   3'- gcGCGCGCUGUGUGC---------------CGU----UGGC-GAGC- -5'
12211 3' -59.1 NC_003309.1 + 22385 0.71 0.271595
Target:  5'- uGCGCGuCGAacgccCGCGCGGC--CUGCUCGu -3'
miRNA:   3'- gCGCGC-GCU-----GUGUGCCGuuGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 22470 0.72 0.233778
Target:  5'- aCGCG-GCGGCaucguGCGCGGCGAUCGCa-- -3'
miRNA:   3'- -GCGCgCGCUG-----UGUGCCGUUGGCGagc -5'
12211 3' -59.1 NC_003309.1 + 22599 0.68 0.422962
Target:  5'- cCGUGCagugucggacaGCGACGC---GCAGCCGCUCa -3'
miRNA:   3'- -GCGCG-----------CGCUGUGugcCGUUGGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 22729 0.66 0.541017
Target:  5'- uCGCGCugaucgucgccgGCGACGC-CGaaaacgcguuccGCAACCGCUgCGu -3'
miRNA:   3'- -GCGCG------------CGCUGUGuGC------------CGUUGGCGA-GC- -5'
12211 3' -59.1 NC_003309.1 + 23571 0.72 0.227923
Target:  5'- uCGCGCGCcccuuGAUcgACcGCAGCCGCUCGg -3'
miRNA:   3'- -GCGCGCG-----CUGugUGcCGUUGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 24037 0.66 0.520425
Target:  5'- uGCGUGCucgACACGGCuccACCGCcCGu -3'
miRNA:   3'- gCGCGCGcugUGUGCCGu--UGGCGaGC- -5'
12211 3' -59.1 NC_003309.1 + 24447 0.68 0.41382
Target:  5'- aGUGCcCGugACGCGGCGGauaucggCGCUCa -3'
miRNA:   3'- gCGCGcGCugUGUGCCGUUg------GCGAGc -5'
12211 3' -59.1 NC_003309.1 + 26345 0.71 0.278356
Target:  5'- aGCGaCGCG-CGCACGacgaCGGCCGCUCc -3'
miRNA:   3'- gCGC-GCGCuGUGUGCc---GUUGGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 27938 0.69 0.378502
Target:  5'- uGCGuCGCGGCggGCACGcGCAAUugauccgucguUGCUCGa -3'
miRNA:   3'- gCGC-GCGCUG--UGUGC-CGUUG-----------GCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 28484 0.7 0.299443
Target:  5'- cCGCGCGCcACGCcggcccguauaGCGGCGAUUGCcCGa -3'
miRNA:   3'- -GCGCGCGcUGUG-----------UGCCGUUGGCGaGC- -5'
12211 3' -59.1 NC_003309.1 + 30107 0.7 0.299443
Target:  5'- aCGUGCGCGAgaACA-GGCAACUGCa-- -3'
miRNA:   3'- -GCGCGCGCUg-UGUgCCGUUGGCGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.