miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12211 3' -59.1 NC_003309.1 + 35735 0.67 0.470412
Target:  5'- uCGCaacCGCGACACGCG--AAUCGCUCu -3'
miRNA:   3'- -GCGc--GCGCUGUGUGCcgUUGGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 52488 0.67 0.451096
Target:  5'- aCGCGCaagccaaggcaaGCGACG-ACGGCcGCCGCa-- -3'
miRNA:   3'- -GCGCG------------CGCUGUgUGCCGuUGGCGagc -5'
12211 3' -59.1 NC_003309.1 + 11518 0.67 0.451096
Target:  5'- gCGCGCccuucuGCGACGCGaGGCucGCCGUgUCGa -3'
miRNA:   3'- -GCGCG------CGCUGUGUgCCGu-UGGCG-AGC- -5'
12211 3' -59.1 NC_003309.1 + 10861 0.67 0.451096
Target:  5'- gCGCGCcuGCGugGCAaGcGCGACaucaCGCUCGg -3'
miRNA:   3'- -GCGCG--CGCugUGUgC-CGUUG----GCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 48696 0.68 0.432224
Target:  5'- gCGUGCGCGAUcgcuGCGCuGCGcucccgauuCCGCUCa -3'
miRNA:   3'- -GCGCGCGCUG----UGUGcCGUu--------GGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 22599 0.68 0.422962
Target:  5'- cCGUGCagugucggacaGCGACGC---GCAGCCGCUCa -3'
miRNA:   3'- -GCGCG-----------CGCUGUGugcCGUUGGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 10598 0.68 0.422962
Target:  5'- uCGCGCGUGcCGuCGCGaCAugCGCUUGc -3'
miRNA:   3'- -GCGCGCGCuGU-GUGCcGUugGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 24447 0.68 0.41382
Target:  5'- aGUGCcCGugACGCGGCGGauaucggCGCUCa -3'
miRNA:   3'- gCGCGcGCugUGUGCCGUUg------GCGAGc -5'
12211 3' -59.1 NC_003309.1 + 6549 0.68 0.408394
Target:  5'- aGCGCGCcuuGCGuauCGCGGCGccagccuugcucucgGCCGCUUGc -3'
miRNA:   3'- gCGCGCGc--UGU---GUGCCGU---------------UGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 35132 0.68 0.404801
Target:  5'- -uCGUGCGAUGCGCuGGacgAACUGCUCGa -3'
miRNA:   3'- gcGCGCGCUGUGUG-CCg--UUGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 9514 0.68 0.403906
Target:  5'- aGCGCGCGcaccgugaccuGCACGCuugcggcguucgaGGCAaacGCCGCaUCGc -3'
miRNA:   3'- gCGCGCGC-----------UGUGUG-------------CCGU---UGGCG-AGC- -5'
12211 3' -59.1 NC_003309.1 + 39813 0.68 0.38714
Target:  5'- aCGCGUGCGAUgaaGCACauCGGCCGCggCGa -3'
miRNA:   3'- -GCGCGCGCUG---UGUGccGUUGGCGa-GC- -5'
12211 3' -59.1 NC_003309.1 + 27938 0.69 0.378502
Target:  5'- uGCGuCGCGGCggGCACGcGCAAUugauccgucguUGCUCGa -3'
miRNA:   3'- gCGC-GCGCUG--UGUGC-CGUUG-----------GCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 35367 0.69 0.377645
Target:  5'- uGCGcCGCGaucGCACACGGCAuacaacggagccgACCGggCGc -3'
miRNA:   3'- gCGC-GCGC---UGUGUGCCGU-------------UGGCgaGC- -5'
12211 3' -59.1 NC_003309.1 + 31999 0.69 0.375936
Target:  5'- cCGCG-GCGuCGCACgucagccgcaaacuGGCGcaaGCCGCUCGc -3'
miRNA:   3'- -GCGCgCGCuGUGUG--------------CCGU---UGGCGAGC- -5'
12211 3' -59.1 NC_003309.1 + 22148 0.69 0.356656
Target:  5'- -uCGCGCGACACGCGccccgccagucgcccGCAuugaACCGcCUCGc -3'
miRNA:   3'- gcGCGCGCUGUGUGC---------------CGU----UGGC-GAGC- -5'
12211 3' -59.1 NC_003309.1 + 16477 0.69 0.353374
Target:  5'- aCGCcCGCGugAUuCGGCAcGCCGUUCu -3'
miRNA:   3'- -GCGcGCGCugUGuGCCGU-UGGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 32599 0.69 0.353374
Target:  5'- aGCGCGgacggcaGACGCugGGCAAaggcaagcacCUGCUCu -3'
miRNA:   3'- gCGCGCg------CUGUGugCCGUU----------GGCGAGc -5'
12211 3' -59.1 NC_003309.1 + 49066 0.69 0.345265
Target:  5'- -aCGCGUGACACGCGacGCAACCGg--- -3'
miRNA:   3'- gcGCGCGCUGUGUGC--CGUUGGCgagc -5'
12211 3' -59.1 NC_003309.1 + 15985 0.69 0.33729
Target:  5'- cCGUcgGCGCGGCugcgagguuucgGCAgGGCAcguacgucucGCCGCUCGc -3'
miRNA:   3'- -GCG--CGCGCUG------------UGUgCCGU----------UGGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.