miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12216 3' -49.7 NC_003309.1 + 16754 0.66 0.952692
Target:  5'- cGuCGcgCGCCGACGucAGGAacgcgCGGAAGc -3'
miRNA:   3'- cC-GCuaGCGGCUGU--UCCUaa---GCUUUC- -5'
12216 3' -49.7 NC_003309.1 + 29915 0.66 0.948097
Target:  5'- aGUGGUgCGUCGACAAGGGgaagcgCGAc-- -3'
miRNA:   3'- cCGCUA-GCGGCUGUUCCUaa----GCUuuc -5'
12216 3' -49.7 NC_003309.1 + 18760 0.66 0.948097
Target:  5'- -aCGAUCGCCGGCGGcGAUagUCGGc-- -3'
miRNA:   3'- ccGCUAGCGGCUGUUcCUA--AGCUuuc -5'
12216 3' -49.7 NC_003309.1 + 33314 0.67 0.943217
Target:  5'- gGGCG-UCGCCGGugacgaauggguCAAGGAcuggcUCGAAGc -3'
miRNA:   3'- -CCGCuAGCGGCU------------GUUCCUa----AGCUUUc -5'
12216 3' -49.7 NC_003309.1 + 22452 0.67 0.938046
Target:  5'- cGGCGAUCGCaCG-CugccGGcgUCGAGc- -3'
miRNA:   3'- -CCGCUAGCG-GCuGuu--CCuaAGCUUuc -5'
12216 3' -49.7 NC_003309.1 + 19834 0.69 0.878404
Target:  5'- cGGCGAUCGCCGACugcaa--CGAc-- -3'
miRNA:   3'- -CCGCUAGCGGCUGuuccuaaGCUuuc -5'
12216 3' -49.7 NC_003309.1 + 31093 0.7 0.826399
Target:  5'- cGGCGGUauUCGAaAAGGAgUUCGAGAGa -3'
miRNA:   3'- -CCGCUAgcGGCUgUUCCU-AAGCUUUC- -5'
12216 3' -49.7 NC_003309.1 + 20188 0.7 0.815954
Target:  5'- cGGCGAaccgcuUCGCCGACAcgAGcaccugcGAUUCGAc-- -3'
miRNA:   3'- -CCGCU------AGCGGCUGU--UC-------CUAAGCUuuc -5'
12216 3' -49.7 NC_003309.1 + 37030 0.71 0.777026
Target:  5'- cGCGAUCGCCaagGGCGAGGc--CGAAGc -3'
miRNA:   3'- cCGCUAGCGG---CUGUUCCuaaGCUUUc -5'
12216 3' -49.7 NC_003309.1 + 31485 0.72 0.73459
Target:  5'- gGGUGAUCGCCGGCGg-----CGAAAGc -3'
miRNA:   3'- -CCGCUAGCGGCUGUuccuaaGCUUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.