miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12248 5' -53.6 NC_003309.1 + 19227 0.66 0.806401
Target:  5'- ---cCGcccgUCGACGG-CGCCCGCAc- -3'
miRNA:   3'- guuaGCua--AGCUGCCgGCGGGUGUag -5'
12248 5' -53.6 NC_003309.1 + 33014 0.66 0.806401
Target:  5'- gCGAUCGuucCGACacuuGCCGCauCCGCAUCu -3'
miRNA:   3'- -GUUAGCuaaGCUGc---CGGCG--GGUGUAG- -5'
12248 5' -53.6 NC_003309.1 + 43286 0.66 0.806401
Target:  5'- --uUCGA--CGAUGGCCGCgUCGCAg- -3'
miRNA:   3'- guuAGCUaaGCUGCCGGCG-GGUGUag -5'
12248 5' -53.6 NC_003309.1 + 10658 0.66 0.796672
Target:  5'- uGAUCGccgCGuACGGCaUGCCCGCGa- -3'
miRNA:   3'- gUUAGCuaaGC-UGCCG-GCGGGUGUag -5'
12248 5' -53.6 NC_003309.1 + 7854 0.66 0.776694
Target:  5'- gCAGUCGAUcUGAuaggaaccggaaCGGCCGCCa--GUCa -3'
miRNA:   3'- -GUUAGCUAaGCU------------GCCGGCGGgugUAG- -5'
12248 5' -53.6 NC_003309.1 + 49114 0.66 0.776694
Target:  5'- -cAUCGAacuuggccugcUUCGGCGuGCCGaCCCGguUCu -3'
miRNA:   3'- guUAGCU-----------AAGCUGC-CGGC-GGGUguAG- -5'
12248 5' -53.6 NC_003309.1 + 48477 0.67 0.756103
Target:  5'- uCAAUCGucagcccgCGGCGGCCGgccuUCCGCuUCa -3'
miRNA:   3'- -GUUAGCuaa-----GCUGCCGGC----GGGUGuAG- -5'
12248 5' -53.6 NC_003309.1 + 11291 0.67 0.733924
Target:  5'- -cAUCGccaaacgUCGGCaccaugacacuuuGcGCCGCCCGCAUCg -3'
miRNA:   3'- guUAGCua-----AGCUG-------------C-CGGCGGGUGUAG- -5'
12248 5' -53.6 NC_003309.1 + 43531 0.67 0.724271
Target:  5'- ---aCGccgUCGGCGGCCaucGCgCGCAUCa -3'
miRNA:   3'- guuaGCua-AGCUGCCGG---CGgGUGUAG- -5'
12248 5' -53.6 NC_003309.1 + 26773 0.67 0.713456
Target:  5'- gCGGUCGGggaaaggUUGACGGCgaaGCCCGCc-- -3'
miRNA:   3'- -GUUAGCUa------AGCUGCCGg--CGGGUGuag -5'
12248 5' -53.6 NC_003309.1 + 31511 0.68 0.702558
Target:  5'- ---cCGGccagcCGACGGCgGCCUACAUUg -3'
miRNA:   3'- guuaGCUaa---GCUGCCGgCGGGUGUAG- -5'
12248 5' -53.6 NC_003309.1 + 8470 0.68 0.680564
Target:  5'- -cAUUGA--CGAC-GCCGCCCACGUg -3'
miRNA:   3'- guUAGCUaaGCUGcCGGCGGGUGUAg -5'
12248 5' -53.6 NC_003309.1 + 36084 0.68 0.669491
Target:  5'- aGAUCGAcguccaCGACGGCCGCgUAUAc- -3'
miRNA:   3'- gUUAGCUaa----GCUGCCGGCGgGUGUag -5'
12248 5' -53.6 NC_003309.1 + 32189 0.68 0.658381
Target:  5'- aGGUCGc--CGAC-GCCGCCCGCAc- -3'
miRNA:   3'- gUUAGCuaaGCUGcCGGCGGGUGUag -5'
12248 5' -53.6 NC_003309.1 + 15330 0.69 0.624944
Target:  5'- -cGUCGg--CGAUGGCUGCUgCGCGUCg -3'
miRNA:   3'- guUAGCuaaGCUGCCGGCGG-GUGUAG- -5'
12248 5' -53.6 NC_003309.1 + 15014 0.71 0.525974
Target:  5'- aGGUCag--CGACGGCCGCCC-CuUCg -3'
miRNA:   3'- gUUAGcuaaGCUGCCGGCGGGuGuAG- -5'
12248 5' -53.6 NC_003309.1 + 45532 0.72 0.473494
Target:  5'- aGGUCGuaUUGACGGCCGCCgCGgcuCGUCu -3'
miRNA:   3'- gUUAGCuaAGCUGCCGGCGG-GU---GUAG- -5'
12248 5' -53.6 NC_003309.1 + 52474 0.72 0.423777
Target:  5'- gCAAgCGA--CGACGGCCGC-CGCAUCc -3'
miRNA:   3'- -GUUaGCUaaGCUGCCGGCGgGUGUAG- -5'
12248 5' -53.6 NC_003309.1 + 26853 0.73 0.404782
Target:  5'- aAGUCGAUcCGG-GGUCGCCgACAUCg -3'
miRNA:   3'- gUUAGCUAaGCUgCCGGCGGgUGUAG- -5'
12248 5' -53.6 NC_003309.1 + 27754 0.73 0.377319
Target:  5'- gAGUCGccagaCGACGcGCCGCCCggcGCAUCg -3'
miRNA:   3'- gUUAGCuaa--GCUGC-CGGCGGG---UGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.