miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12249 5' -51.3 NC_003309.1 + 13525 0.66 0.898966
Target:  5'- uGAAUGUCGAUUCGcgauuguucagGCCGucUGCg -3'
miRNA:   3'- gCUUACGGCUAAGCua---------CGGCuuGCGa -5'
12249 5' -51.3 NC_003309.1 + 43602 0.66 0.893185
Target:  5'- cCGggUGCCcg-UCGGgcagGUaCGAGCGCa -3'
miRNA:   3'- -GCuuACGGcuaAGCUa---CG-GCUUGCGa -5'
12249 5' -51.3 NC_003309.1 + 44528 0.66 0.885709
Target:  5'- uGAGUucgcaGCCGAUgaaaCGGcgGCCGAgGCGCUg -3'
miRNA:   3'- gCUUA-----CGGCUAa---GCUa-CGGCU-UGCGA- -5'
12249 5' -51.3 NC_003309.1 + 3327 0.66 0.885709
Target:  5'- aGAu--CCGcg-CGAUGUCGAGCGCg -3'
miRNA:   3'- gCUuacGGCuaaGCUACGGCUUGCGa -5'
12249 5' -51.3 NC_003309.1 + 15308 0.67 0.877958
Target:  5'- uCGGAUGUCugcUCGAaGCCGGugGCc -3'
miRNA:   3'- -GCUUACGGcuaAGCUaCGGCUugCGa -5'
12249 5' -51.3 NC_003309.1 + 9396 0.68 0.834438
Target:  5'- gCGGcgGUCGuAUUCGGUcguauucGCCGuAACGCUg -3'
miRNA:   3'- -GCUuaCGGC-UAAGCUA-------CGGC-UUGCGA- -5'
12249 5' -51.3 NC_003309.1 + 30721 0.7 0.728185
Target:  5'- uGAAUGCCG---CGAUGauagcgacuaucgaaCCGAACGCUu -3'
miRNA:   3'- gCUUACGGCuaaGCUAC---------------GGCUUGCGA- -5'
12249 5' -51.3 NC_003309.1 + 21902 0.7 0.701821
Target:  5'- uGcAUGCCGugaCGAUGCCGAuuggaucuggccGCGCg -3'
miRNA:   3'- gCuUACGGCuaaGCUACGGCU------------UGCGa -5'
12249 5' -51.3 NC_003309.1 + 32202 0.73 0.544856
Target:  5'- gCGAGUGCCGAUcaGGUcGCCG-ACGCc -3'
miRNA:   3'- -GCUUACGGCUAagCUA-CGGCuUGCGa -5'
12249 5' -51.3 NC_003309.1 + 48028 0.73 0.533889
Target:  5'- aGAGUgGCCGG-UCGAggucGCCGGAUGCg -3'
miRNA:   3'- gCUUA-CGGCUaAGCUa---CGGCUUGCGa -5'
12249 5' -51.3 NC_003309.1 + 35536 0.74 0.469988
Target:  5'- gGAAU-CCGAcgUCGAUGCCGAGaGCUa -3'
miRNA:   3'- gCUUAcGGCUa-AGCUACGGCUUgCGA- -5'
12249 5' -51.3 NC_003309.1 + 28565 0.78 0.290692
Target:  5'- ----gGCCGAUUCGAUGCCaGACGUUu -3'
miRNA:   3'- gcuuaCGGCUAAGCUACGGcUUGCGA- -5'
12249 5' -51.3 NC_003309.1 + 49457 0.79 0.261959
Target:  5'- gCGAAUGCCGAUUgCGAUGCaCGuAUGCc -3'
miRNA:   3'- -GCUUACGGCUAA-GCUACG-GCuUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.