miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12255 5' -51.3 NC_003309.1 + 525 0.66 0.893476
Target:  5'- aGGC-GCUGCCGgcucgccGGGUCGAGCc---- -3'
miRNA:   3'- -UCGcCGACGGUa------CCUAGCUUGaaauc -5'
12255 5' -51.3 NC_003309.1 + 764 0.66 0.861525
Target:  5'- cAGCGGC--CUccGGAUCGAACUUc-- -3'
miRNA:   3'- -UCGCCGacGGuaCCUAGCUUGAAauc -5'
12255 5' -51.3 NC_003309.1 + 9558 0.66 0.869921
Target:  5'- cGGCGGCuugUGCgUAUucgcGGAUCGAACUg--- -3'
miRNA:   3'- -UCGCCG---ACG-GUA----CCUAGCUUGAaauc -5'
12255 5' -51.3 NC_003309.1 + 9710 0.71 0.596469
Target:  5'- gAGCGGUUGCCGUGuGUCGcGCg---- -3'
miRNA:   3'- -UCGCCGACGGUACcUAGCuUGaaauc -5'
12255 5' -51.3 NC_003309.1 + 16021 0.67 0.85287
Target:  5'- cGGCGGCguaGUCAUcGGAUgCGAGCg---- -3'
miRNA:   3'- -UCGCCGa--CGGUA-CCUA-GCUUGaaauc -5'
12255 5' -51.3 NC_003309.1 + 22606 0.68 0.764947
Target:  5'- -cCGGCUGCCGUGcaguGUCGGACa---- -3'
miRNA:   3'- ucGCCGACGGUACc---UAGCUUGaaauc -5'
12255 5' -51.3 NC_003309.1 + 44474 0.67 0.85287
Target:  5'- uGCcGCUGCCGaagaacGGAUCGAACa---- -3'
miRNA:   3'- uCGcCGACGGUa-----CCUAGCUUGaaauc -5'
12255 5' -51.3 NC_003309.1 + 48594 0.67 0.825438
Target:  5'- cAGCGGUaUGUCGUGGGgcgCGAGCc---- -3'
miRNA:   3'- -UCGCCG-ACGGUACCUa--GCUUGaaauc -5'
12255 5' -51.3 NC_003309.1 + 52578 0.68 0.764947
Target:  5'- aGGaCGGCcaccgggccuuUGCCGUGGuccccAUCGAACUgUGGg -3'
miRNA:   3'- -UC-GCCG-----------ACGGUACC-----UAGCUUGAaAUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.