miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12267 5' -55.7 NC_003309.1 + 14128 0.66 0.710794
Target:  5'- cCGCGcuCGGCGACGUgccaGAucuucacacCGUCAGa -3'
miRNA:   3'- -GCGCuuGCCGCUGCGa---CUuc-------GCAGUC- -5'
12267 5' -55.7 NC_003309.1 + 31267 0.66 0.710794
Target:  5'- aGuCGAACGGUGACuacggGAAGUGUCu- -3'
miRNA:   3'- gC-GCUUGCCGCUGcga--CUUCGCAGuc -5'
12267 5' -55.7 NC_003309.1 + 32394 0.66 0.68933
Target:  5'- -cCGAGCGGCGAcggcuCGCUGcGGCGg--- -3'
miRNA:   3'- gcGCUUGCCGCU-----GCGACuUCGCaguc -5'
12267 5' -55.7 NC_003309.1 + 37031 0.66 0.678511
Target:  5'- uCGCGAucgccaAgGGCGAgGCcGAAGCGcUCGa -3'
miRNA:   3'- -GCGCU------UgCCGCUgCGaCUUCGC-AGUc -5'
12267 5' -55.7 NC_003309.1 + 33656 0.68 0.580407
Target:  5'- aGCGAACGGCug-GCUGAGGCcggCAu -3'
miRNA:   3'- gCGCUUGCCGcugCGACUUCGca-GUc -5'
12267 5' -55.7 NC_003309.1 + 11983 0.68 0.5696
Target:  5'- gCGCGGcagccGCGGCG-CGCgcc-GCGUCGGc -3'
miRNA:   3'- -GCGCU-----UGCCGCuGCGacuuCGCAGUC- -5'
12267 5' -55.7 NC_003309.1 + 37587 0.69 0.526948
Target:  5'- aCGCu-ACGGCGACGaCcGcGGCGUCAa -3'
miRNA:   3'- -GCGcuUGCCGCUGC-GaCuUCGCAGUc -5'
12267 5' -55.7 NC_003309.1 + 15573 0.69 0.516464
Target:  5'- aGuCGAGCGGCGACGa--GAGCGUgAa -3'
miRNA:   3'- gC-GCUUGCCGCUGCgacUUCGCAgUc -5'
12267 5' -55.7 NC_003309.1 + 41288 0.7 0.485547
Target:  5'- uGgGAACGGCuuGACGCUGGcggccgGGC-UCAGg -3'
miRNA:   3'- gCgCUUGCCG--CUGCGACU------UCGcAGUC- -5'
12267 5' -55.7 NC_003309.1 + 25762 0.7 0.445758
Target:  5'- aCGCGGAgcgcaugauCGGCGACGgaGGGaucuGCGUCAu -3'
miRNA:   3'- -GCGCUU---------GCCGCUGCgaCUU----CGCAGUc -5'
12267 5' -55.7 NC_003309.1 + 15332 0.7 0.445758
Target:  5'- aGCGu-CGGCGAUgGCUGcugcGCGUCGGa -3'
miRNA:   3'- gCGCuuGCCGCUG-CGACuu--CGCAGUC- -5'
12267 5' -55.7 NC_003309.1 + 22459 0.7 0.436097
Target:  5'- uCGUGcGCGGCGAucgcaCGCUGccGGCGUCGa -3'
miRNA:   3'- -GCGCuUGCCGCU-----GCGACu-UCGCAGUc -5'
12267 5' -55.7 NC_003309.1 + 32598 0.73 0.314692
Target:  5'- gCGCGGACGGCaGACGCUG-GGCa---- -3'
miRNA:   3'- -GCGCUUGCCG-CUGCGACuUCGcaguc -5'
12267 5' -55.7 NC_003309.1 + 22645 0.73 0.292243
Target:  5'- aCGC---CGGCGGCGCUgGAAGCGcCGGg -3'
miRNA:   3'- -GCGcuuGCCGCUGCGA-CUUCGCaGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.