miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12273 3' -57.9 NC_003309.1 + 31948 0.66 0.579989
Target:  5'- gCAGCGCAcgaacaguUCUU-CGCCGCccGCGGcCGGc -3'
miRNA:   3'- -GUCGCGU--------AGAAcGCGGCGc-UGUC-GCC- -5'
12273 3' -57.9 NC_003309.1 + 12744 0.66 0.537427
Target:  5'- uCAGCGCcuccucggccAUC-UGCGCUGCGuucuGC-GCGGa -3'
miRNA:   3'- -GUCGCG----------UAGaACGCGGCGC----UGuCGCC- -5'
12273 3' -57.9 NC_003309.1 + 45757 0.66 0.54375
Target:  5'- uCGGCGCcugauguacGCGCCGguCGuACAGCGGg -3'
miRNA:   3'- -GUCGCGuagaa----CGCGGC--GC-UGUCGCC- -5'
12273 3' -57.9 NC_003309.1 + 40119 0.66 0.558594
Target:  5'- aCAGCGagaaCAUCggucGCGCCcaugcaauGCGGCAcGCGGc -3'
miRNA:   3'- -GUCGC----GUAGaa--CGCGG--------CGCUGU-CGCC- -5'
12273 3' -57.9 NC_003309.1 + 17759 0.66 0.558594
Target:  5'- cCAGC-CGUUUUuCGCgCGCGGCAGCu- -3'
miRNA:   3'- -GUCGcGUAGAAcGCG-GCGCUGUCGcc -5'
12273 3' -57.9 NC_003309.1 + 3549 0.66 0.562857
Target:  5'- gCGGCGUAUCgcgacgacugauCGCCGCG-CAGCa- -3'
miRNA:   3'- -GUCGCGUAGaac---------GCGGCGCuGUCGcc -5'
12273 3' -57.9 NC_003309.1 + 10945 0.66 0.569267
Target:  5'- gAGCGcCGUC-UGCGCCGUcGCcGCGc -3'
miRNA:   3'- gUCGC-GUAGaACGCGGCGcUGuCGCc -5'
12273 3' -57.9 NC_003309.1 + 53318 0.67 0.485859
Target:  5'- cCGGCGCAUC---CGCCGggcgggcaaCGACgGGCGGg -3'
miRNA:   3'- -GUCGCGUAGaacGCGGC---------GCUG-UCGCC- -5'
12273 3' -57.9 NC_003309.1 + 34566 0.67 0.485859
Target:  5'- gAGCGCGcagUGCGCCugguacGCGAgCAGCGu -3'
miRNA:   3'- gUCGCGUagaACGCGG------CGCU-GUCGCc -5'
12273 3' -57.9 NC_003309.1 + 7162 0.67 0.495994
Target:  5'- --aCGCAUCUgGuCGCCGauaccggccCGAUAGCGGa -3'
miRNA:   3'- gucGCGUAGAaC-GCGGC---------GCUGUCGCC- -5'
12273 3' -57.9 NC_003309.1 + 42199 0.67 0.506225
Target:  5'- gUAGUGgAUCUggGUGCCGCcauCAGCGa -3'
miRNA:   3'- -GUCGCgUAGAa-CGCGGCGcu-GUCGCc -5'
12273 3' -57.9 NC_003309.1 + 6551 0.67 0.506225
Target:  5'- gUAGCGCGcCUUGCGUauCGCGGCgccAGCc- -3'
miRNA:   3'- -GUCGCGUaGAACGCG--GCGCUG---UCGcc -5'
12273 3' -57.9 NC_003309.1 + 192 0.67 0.506225
Target:  5'- uCAGCGCGcgCUUGCcgggauuucccGCCGCGAUuuuccGCGc -3'
miRNA:   3'- -GUCGCGUa-GAACG-----------CGGCGCUGu----CGCc -5'
12273 3' -57.9 NC_003309.1 + 18550 0.67 0.506225
Target:  5'- aCGGUGCG-CcUGCGCCuGCGACGuGCa- -3'
miRNA:   3'- -GUCGCGUaGaACGCGG-CGCUGU-CGcc -5'
12273 3' -57.9 NC_003309.1 + 37225 0.67 0.523817
Target:  5'- gCAGCGCGUCgaggacgagguaaagGCgaacGCCGCGAaGGuCGGa -3'
miRNA:   3'- -GUCGCGUAGaa-------------CG----CGGCGCUgUC-GCC- -5'
12273 3' -57.9 NC_003309.1 + 41041 0.67 0.523817
Target:  5'- cCAGCGUccGUCggGaCGCCGCcgcugcacaagcgcGACAGCGc -3'
miRNA:   3'- -GUCGCG--UAGaaC-GCGGCG--------------CUGUCGCc -5'
12273 3' -57.9 NC_003309.1 + 27496 0.67 0.52486
Target:  5'- aAGCGCAUCcuugaagucgaGCGCgGCGAagaGGCGu -3'
miRNA:   3'- gUCGCGUAGaa---------CGCGgCGCUg--UCGCc -5'
12273 3' -57.9 NC_003309.1 + 43442 0.67 0.525903
Target:  5'- -cGCGCAgcc-GCGCCGCGAgauugaaCAGCa- -3'
miRNA:   3'- guCGCGUagaaCGCGGCGCU-------GUCGcc -5'
12273 3' -57.9 NC_003309.1 + 18727 0.67 0.526947
Target:  5'- gAGCGUgaucGUCUcGCcgGCUGCGGC-GCGGa -3'
miRNA:   3'- gUCGCG----UAGAaCG--CGGCGCUGuCGCC- -5'
12273 3' -57.9 NC_003309.1 + 10585 0.68 0.46589
Target:  5'- -cGCGaCAUgcgCUUGCGCCGCcgccucGACGGCa- -3'
miRNA:   3'- guCGC-GUA---GAACGCGGCG------CUGUCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.