Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12273 | 3' | -57.9 | NC_003309.1 | + | 192 | 0.67 | 0.506225 |
Target: 5'- uCAGCGCGcgCUUGCcgggauuucccGCCGCGAUuuuccGCGc -3' miRNA: 3'- -GUCGCGUa-GAACG-----------CGGCGCUGu----CGCc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 3297 | 0.7 | 0.347003 |
Target: 5'- gCAGCGCGUCgaucaGCGCUGCaucGACguucgucaucgauAGCGGc -3' miRNA: 3'- -GUCGCGUAGaa---CGCGGCG---CUG-------------UCGCC- -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 3549 | 0.66 | 0.562857 |
Target: 5'- gCGGCGUAUCgcgacgacugauCGCCGCG-CAGCa- -3' miRNA: 3'- -GUCGCGUAGaac---------GCGGCGCuGUCGcc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 5063 | 0.84 | 0.039585 |
Target: 5'- gGGCGCggCggccgGUGCCGCGACGGCGGu -3' miRNA: 3'- gUCGCGuaGaa---CGCGGCGCUGUCGCC- -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 5152 | 0.69 | 0.390644 |
Target: 5'- -uGCGCGUCgccgcGCGCCGCcGCgAGCGc -3' miRNA: 3'- guCGCGUAGaa---CGCGGCGcUG-UCGCc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 6551 | 0.67 | 0.506225 |
Target: 5'- gUAGCGCGcCUUGCGUauCGCGGCgccAGCc- -3' miRNA: 3'- -GUCGCGUaGAACGCG--GCGCUG---UCGcc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 7162 | 0.67 | 0.495994 |
Target: 5'- --aCGCAUCUgGuCGCCGauaccggccCGAUAGCGGa -3' miRNA: 3'- gucGCGUAGAaC-GCGGC---------GCUGUCGCC- -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 10068 | 0.7 | 0.347825 |
Target: 5'- aCAGCGUAUCcgUGCcgcccGCCGCGcgcguCAGCGc -3' miRNA: 3'- -GUCGCGUAGa-ACG-----CGGCGCu----GUCGCc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 10317 | 0.69 | 0.390644 |
Target: 5'- gGGCGCcgacccacgcuGUCgccgccUGCgucGCCGCGACuGCGGa -3' miRNA: 3'- gUCGCG-----------UAGa-----ACG---CGGCGCUGuCGCC- -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 10426 | 0.7 | 0.356115 |
Target: 5'- -uGCGCGUUUUGCagcuucGCCGCaGCAGCa- -3' miRNA: 3'- guCGCGUAGAACG------CGGCGcUGUCGcc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 10585 | 0.68 | 0.46589 |
Target: 5'- -cGCGaCAUgcgCUUGCGCCGCcgccucGACGGCa- -3' miRNA: 3'- guCGC-GUA---GAACGCGGCG------CUGUCGcc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 10704 | 0.68 | 0.456067 |
Target: 5'- uCGGCGCG-CUcgagcuccugcUGCGCgGCGGCcgucucGCGGg -3' miRNA: 3'- -GUCGCGUaGA-----------ACGCGgCGCUGu-----CGCC- -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 10945 | 0.66 | 0.569267 |
Target: 5'- gAGCGcCGUC-UGCGCCGUcGCcGCGc -3' miRNA: 3'- gUCGC-GUAGaACGCGGCGcUGuCGCc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 11978 | 0.7 | 0.331661 |
Target: 5'- gCAGcCGCggCgcGCGCCGCGuCGGCGu -3' miRNA: 3'- -GUC-GCGuaGaaCGCGGCGCuGUCGCc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 12358 | 0.68 | 0.446356 |
Target: 5'- uCAGCuuGUUgaucGCGUCGCGAUAGCGc -3' miRNA: 3'- -GUCGcgUAGaa--CGCGGCGCUGUCGCc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 12744 | 0.66 | 0.537427 |
Target: 5'- uCAGCGCcuccucggccAUC-UGCGCUGCGuucuGC-GCGGa -3' miRNA: 3'- -GUCGCG----------UAGaACGCGGCGC----UGuCGCC- -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 17759 | 0.66 | 0.558594 |
Target: 5'- cCAGC-CGUUUUuCGCgCGCGGCAGCu- -3' miRNA: 3'- -GUCGcGUAGAAcGCG-GCGCUGUCGcc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 18401 | 0.7 | 0.316057 |
Target: 5'- gUAGCGCGUCUUGCGCuCGCuGCcGaCGu -3' miRNA: 3'- -GUCGCGUAGAACGCG-GCGcUGuC-GCc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 18550 | 0.67 | 0.506225 |
Target: 5'- aCGGUGCG-CcUGCGCCuGCGACGuGCa- -3' miRNA: 3'- -GUCGCGUaGaACGCGG-CGCUGU-CGcc -5' |
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12273 | 3' | -57.9 | NC_003309.1 | + | 18727 | 0.67 | 0.526947 |
Target: 5'- gAGCGUgaucGUCUcGCcgGCUGCGGC-GCGGa -3' miRNA: 3'- gUCGCG----UAGAaCG--CGGCGCUGuCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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