miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12295 3' -49.9 NC_003313.1 + 26149 0.66 0.87116
Target:  5'- uCUugUGUGaagcCAGUGAagcgGGAGCCGCu -3'
miRNA:   3'- cGGugGCACga--GUCAUUa---UUUCGGCG- -5'
12295 3' -49.9 NC_003313.1 + 9220 0.66 0.853548
Target:  5'- gGCU-CCGUuC-CAGUggucGAUAAAGCCGCc -3'
miRNA:   3'- -CGGuGGCAcGaGUCA----UUAUUUCGGCG- -5'
12295 3' -49.9 NC_003313.1 + 32819 0.66 0.853548
Target:  5'- cGCCGCCGUG---GGUAu--GGGuuGCg -3'
miRNA:   3'- -CGGUGGCACgagUCAUuauUUCggCG- -5'
12295 3' -49.9 NC_003313.1 + 18653 0.66 0.844332
Target:  5'- -gCGCCGUguuuGCUCGGgcA-AAAGCCGa -3'
miRNA:   3'- cgGUGGCA----CGAGUCauUaUUUCGGCg -5'
12295 3' -49.9 NC_003313.1 + 26579 0.66 0.834856
Target:  5'- cGUCACCGUGg-CcGUGGU--GGCCGUc -3'
miRNA:   3'- -CGGUGGCACgaGuCAUUAuuUCGGCG- -5'
12295 3' -49.9 NC_003313.1 + 30135 0.67 0.804989
Target:  5'- aGgCACUGUGCUCAGUGcaac-GCCc- -3'
miRNA:   3'- -CgGUGGCACGAGUCAUuauuuCGGcg -5'
12295 3' -49.9 NC_003313.1 + 30693 0.68 0.72857
Target:  5'- cGCUGCC--GCUCAGUGAUuuAAGCgCGUu -3'
miRNA:   3'- -CGGUGGcaCGAGUCAUUAu-UUCG-GCG- -5'
12295 3' -49.9 NC_003313.1 + 22690 0.69 0.717089
Target:  5'- cGCCACCcUGaa-AGgg--GAAGCCGCa -3'
miRNA:   3'- -CGGUGGcACgagUCauuaUUUCGGCG- -5'
12295 3' -49.9 NC_003313.1 + 24674 0.72 0.540665
Target:  5'- aCCGaaGUGCUCAGUuau---GCCGCc -3'
miRNA:   3'- cGGUggCACGAGUCAuuauuuCGGCG- -5'
12295 3' -49.9 NC_003313.1 + 30014 0.73 0.473224
Target:  5'- uCCACCGUGUUCug-GAUuGAGCCuGCu -3'
miRNA:   3'- cGGUGGCACGAGucaUUAuUUCGG-CG- -5'
12295 3' -49.9 NC_003313.1 + 18275 0.78 0.228624
Target:  5'- cGCCGCCGcGCUCGGcUGGcGAGGuuGCa -3'
miRNA:   3'- -CGGUGGCaCGAGUC-AUUaUUUCggCG- -5'
12295 3' -49.9 NC_003313.1 + 12496 1.14 0.000856
Target:  5'- gGCCACCGUGCUCAGUAAUAAAGCCGCc -3'
miRNA:   3'- -CGGUGGCACGAGUCAUUAUUUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.