miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12304 3' -54.4 NC_003313.1 + 25653 0.66 0.578549
Target:  5'- aCGAGCAacccaucagcaccgAGGUGAUcgcaugagcaAAAGaCCGCAG-GCc -3'
miRNA:   3'- -GCUCGU--------------UCCGCUG----------UUUC-GGCGUCuCG- -5'
12304 3' -54.4 NC_003313.1 + 11461 0.67 0.559189
Target:  5'- aGAGCAGGGUGAacGAGUgGUGGAu- -3'
miRNA:   3'- gCUCGUUCCGCUguUUCGgCGUCUcg -5'
12304 3' -54.4 NC_003313.1 + 9754 0.67 0.536652
Target:  5'- --cGCAAGGCGGCGcAGuUCGCGGuauGUg -3'
miRNA:   3'- gcuCGUUCCGCUGUuUC-GGCGUCu--CG- -5'
12304 3' -54.4 NC_003313.1 + 24015 0.67 0.51444
Target:  5'- -aAGCuGAGGaaaugGGCAAGGCCGCAuGGGUu -3'
miRNA:   3'- gcUCG-UUCCg----CUGUUUCGGCGU-CUCG- -5'
12304 3' -54.4 NC_003313.1 + 10570 0.68 0.503474
Target:  5'- aGAGUuggAAGGCGACu-GGCCauuaGCguaGGAGCu -3'
miRNA:   3'- gCUCG---UUCCGCUGuuUCGG----CG---UCUCG- -5'
12304 3' -54.4 NC_003313.1 + 10170 0.68 0.470161
Target:  5'- gGAGCGAagcgacugccuuuGGCGGCucuGCCGCcucucGGAGUu -3'
miRNA:   3'- gCUCGUU-------------CCGCUGuuuCGGCG-----UCUCG- -5'
12304 3' -54.4 NC_003313.1 + 22018 0.69 0.419926
Target:  5'- aCGGGCGGGGCGAUAGucGGCCaagaauacGUAcAGCc -3'
miRNA:   3'- -GCUCGUUCCGCUGUU--UCGG--------CGUcUCG- -5'
12304 3' -54.4 NC_003313.1 + 11275 0.69 0.410078
Target:  5'- --uGC--GGCG-CAAAGCCGCAGcGCa -3'
miRNA:   3'- gcuCGuuCCGCuGUUUCGGCGUCuCG- -5'
12304 3' -54.4 NC_003313.1 + 12799 0.7 0.372161
Target:  5'- gCGGGCAuGGGCGGCAuguuaCCGCAGcaaGGUg -3'
miRNA:   3'- -GCUCGU-UCCGCUGUuuc--GGCGUC---UCG- -5'
12304 3' -54.4 NC_003313.1 + 31008 0.7 0.363062
Target:  5'- uGAGCAAGGUcuuuaaaugcGAUGAGGCCGgAGAu- -3'
miRNA:   3'- gCUCGUUCCG----------CUGUUUCGGCgUCUcg -5'
12304 3' -54.4 NC_003313.1 + 20696 0.71 0.30377
Target:  5'- aGAGCuuuuAGGGUGGCGAGGUC-UAGGGCu -3'
miRNA:   3'- gCUCG----UUCCGCUGUUUCGGcGUCUCG- -5'
12304 3' -54.4 NC_003313.1 + 10242 0.77 0.131644
Target:  5'- cCGAG--AGGCGGCAGAGCCGCcaaaGGCa -3'
miRNA:   3'- -GCUCguUCCGCUGUUUCGGCGuc--UCG- -5'
12304 3' -54.4 NC_003313.1 + 30910 1.12 0.000351
Target:  5'- cCGAGCAAGGCGACAAAGCCGCAGAGCu -3'
miRNA:   3'- -GCUCGUUCCGCUGUUUCGGCGUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.