miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12321 3' -64.4 NC_003324.1 + 28613 0.66 0.307754
Target:  5'- cGCUGUCGc--CCUCG-UGGCCCGGaUCg -3'
miRNA:   3'- -CGGCGGCcuaGGAGCgACCGGGCC-GG- -5'
12321 3' -64.4 NC_003324.1 + 29977 0.69 0.194666
Target:  5'- gGCaGCCGGGUCCgcaUCGau--CCCGGCCg -3'
miRNA:   3'- -CGgCGGCCUAGG---AGCgaccGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 30037 0.66 0.322209
Target:  5'- uGCCGCCgcuacgcaGGAcgccCCUCGCccGUCCGGaCCg -3'
miRNA:   3'- -CGGCGG--------CCUa---GGAGCGacCGGGCC-GG- -5'
12321 3' -64.4 NC_003324.1 + 30063 0.67 0.254908
Target:  5'- cGCCGCCGG----UCGCgacaCCGGCCg -3'
miRNA:   3'- -CGGCGGCCuaggAGCGaccgGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 30669 0.69 0.204608
Target:  5'- aGCUGCgCGGAUCg-CGCcacGCCgGGCCa -3'
miRNA:   3'- -CGGCG-GCCUAGgaGCGac-CGGgCCGG- -5'
12321 3' -64.4 NC_003324.1 + 31147 0.72 0.116556
Target:  5'- cGCUGCaGGccugCCUCGCggagcuGCCCGGCCu -3'
miRNA:   3'- -CGGCGgCCua--GGAGCGac----CGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 31247 0.66 0.322209
Target:  5'- cGCCGCCGGccgcacugcgcGUUUUUGCggcGGCgaCGGCUu -3'
miRNA:   3'- -CGGCGGCC-----------UAGGAGCGa--CCGg-GCCGG- -5'
12321 3' -64.4 NC_003324.1 + 31317 0.68 0.248853
Target:  5'- uGCgGCCGGcgg--CGCUGGCgCUGGCg -3'
miRNA:   3'- -CGgCGGCCuaggaGCGACCG-GGCCGg -5'
12321 3' -64.4 NC_003324.1 + 32107 0.68 0.249453
Target:  5'- cGUCGCCGGugaggCCgagugccuuggucucCGCcucgGGCCgGGCCg -3'
miRNA:   3'- -CGGCGGCCua---GGa--------------GCGa---CCGGgCCGG- -5'
12321 3' -64.4 NC_003324.1 + 32319 0.7 0.163138
Target:  5'- cGCCGCaucucCGGAUCCU-GCaUGGCCU-GCCu -3'
miRNA:   3'- -CGGCG-----GCCUAGGAgCG-ACCGGGcCGG- -5'
12321 3' -64.4 NC_003324.1 + 33367 0.67 0.273801
Target:  5'- gGuuGCCGGcUCCgcgCGCaacUCCGGCCa -3'
miRNA:   3'- -CggCGGCCuAGGa--GCGaccGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 34410 0.67 0.273801
Target:  5'- cGCCGCCG--UCCUCgGCaucGGUgaugUCGGCCg -3'
miRNA:   3'- -CGGCGGCcuAGGAG-CGa--CCG----GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 35898 0.71 0.139851
Target:  5'- aGCUGCUGGG-Caa-GCUGGCuCCGGUCa -3'
miRNA:   3'- -CGGCGGCCUaGgagCGACCG-GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 40042 0.67 0.254908
Target:  5'- aGCuCGUCGGccGUCCaccguaguugCGCgGGUCUGGCCg -3'
miRNA:   3'- -CG-GCGGCC--UAGGa---------GCGaCCGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 42754 0.75 0.070348
Target:  5'- gGuuGCCGG-UCCUgG-UGGCCCGGCg -3'
miRNA:   3'- -CggCGGCCuAGGAgCgACCGGGCCGg -5'
12321 3' -64.4 NC_003324.1 + 42955 0.77 0.053694
Target:  5'- gGUCGCa-GAUCCUCGC-GGgCCGGCCg -3'
miRNA:   3'- -CGGCGgcCUAGGAGCGaCCgGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 43724 0.66 0.293799
Target:  5'- uGCUGCCaaucgGGAUCagggUCGCgacugugaaaGGCCCGGUa -3'
miRNA:   3'- -CGGCGG-----CCUAGg---AGCGa---------CCGGGCCGg -5'
12321 3' -64.4 NC_003324.1 + 51598 0.69 0.204608
Target:  5'- aGCCaCCGGccauguucGUCCUCGUcuGCCCGGUa -3'
miRNA:   3'- -CGGcGGCC--------UAGGAGCGacCGGGCCGg -5'
12321 3' -64.4 NC_003324.1 + 54425 0.73 0.107723
Target:  5'- cGCUGCCGGG-CCUCGaCUGGgucauagCCGGCg -3'
miRNA:   3'- -CGGCGGCCUaGGAGC-GACCg------GGCCGg -5'
12321 3' -64.4 NC_003324.1 + 54516 0.71 0.132791
Target:  5'- cGCCGCCGGcuaugaCCcagUCGa-GGCCCGGCa -3'
miRNA:   3'- -CGGCGGCCua----GG---AGCgaCCGGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.