miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12321 3' -64.4 NC_003324.1 + 1592 1.12 0.000093
Target:  5'- uGCCGCCGGAUCCUCGCUGGCCCGGCCg -3'
miRNA:   3'- -CGGCGGCCUAGGAGCGACCGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 5253 0.65 0.33489
Target:  5'- gGCCGCCGcaccagcggcaggcGAUauccucgaUCUCGCUaugauCCCGGCCg -3'
miRNA:   3'- -CGGCGGC--------------CUA--------GGAGCGAcc---GGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 5556 0.67 0.287009
Target:  5'- uGCCGCCGcaacCUUCGCcgcgGGCgucaUCGGCCu -3'
miRNA:   3'- -CGGCGGCcua-GGAGCGa---CCG----GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 6395 0.68 0.237098
Target:  5'- gGCCaGCgGauguGAUCCUCgucgagaaGCUGGauaCCGGCCa -3'
miRNA:   3'- -CGG-CGgC----CUAGGAG--------CGACCg--GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 12203 0.72 0.116556
Target:  5'- aGCCGCCGGAcggUCUCGCgGGUCUcGCa -3'
miRNA:   3'- -CGGCGGCCUa--GGAGCGaCCGGGcCGg -5'
12321 3' -64.4 NC_003324.1 + 13097 0.67 0.269934
Target:  5'- cGCCGCCGacgcagCCUCGCUGacgguuagcaucuucGCCgaCGGCa -3'
miRNA:   3'- -CGGCGGCcua---GGAGCGAC---------------CGG--GCCGg -5'
12321 3' -64.4 NC_003324.1 + 13369 0.68 0.225261
Target:  5'- cGCUGCCguacggaucgaGGAUCUgcaggaaUUGCUGcaGCUCGGCCa -3'
miRNA:   3'- -CGGCGG-----------CCUAGG-------AGCGAC--CGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 13942 0.7 0.171646
Target:  5'- uGCCGuuGGcUCCcaucucgauUCGCUGGaaaaCgGGCCg -3'
miRNA:   3'- -CGGCggCCuAGG---------AGCGACCg---GgCCGG- -5'
12321 3' -64.4 NC_003324.1 + 14467 0.68 0.225813
Target:  5'- aUCGgCGGA-CCUUGCUGGCaCCGucgcggaaGCCg -3'
miRNA:   3'- cGGCgGCCUaGGAGCGACCG-GGC--------CGG- -5'
12321 3' -64.4 NC_003324.1 + 14662 0.7 0.159028
Target:  5'- cGCCGCCGGccgCUUgCGCcGGCa-GGCCg -3'
miRNA:   3'- -CGGCGGCCua-GGA-GCGaCCGggCCGG- -5'
12321 3' -64.4 NC_003324.1 + 16335 0.66 0.292431
Target:  5'- cGUCGCgGGuuuguuagggcCCUgCGCUGGCCgcgucggcaCGGCCu -3'
miRNA:   3'- -CGGCGgCCua---------GGA-GCGACCGG---------GCCGG- -5'
12321 3' -64.4 NC_003324.1 + 18292 0.68 0.231398
Target:  5'- -aCGCgCGGGcaaUCGCUGcCCCGGCCu -3'
miRNA:   3'- cgGCG-GCCUaggAGCGACcGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 18488 0.66 0.307044
Target:  5'- cGUCGCCuucguguGGuUCCUCGCagGGUCCGucagcgcuGCCa -3'
miRNA:   3'- -CGGCGG-------CCuAGGAGCGa-CCGGGC--------CGG- -5'
12321 3' -64.4 NC_003324.1 + 18856 0.66 0.293799
Target:  5'- cGuuGCCGaGAUCgaggagcugCUCGUgGGCuCCGGCg -3'
miRNA:   3'- -CggCGGC-CUAG---------GAGCGaCCG-GGCCGg -5'
12321 3' -64.4 NC_003324.1 + 19067 0.69 0.18515
Target:  5'- aGCCGCCGuauuUCC-CGCUcGGUcguuUCGGCCg -3'
miRNA:   3'- -CGGCGGCcu--AGGaGCGA-CCG----GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 21848 0.67 0.280343
Target:  5'- uGUCGCCGGAcgaguUCCUCGCccugcaGaGCCCGuuCu -3'
miRNA:   3'- -CGGCGGCCU-----AGGAGCGa-----C-CGGGCcgG- -5'
12321 3' -64.4 NC_003324.1 + 21852 0.71 0.139851
Target:  5'- cGCaGCCGGGccUCCUCgGC-GGCCUuGGCCu -3'
miRNA:   3'- -CGgCGGCCU--AGGAG-CGaCCGGG-CCGG- -5'
12321 3' -64.4 NC_003324.1 + 21931 0.66 0.300714
Target:  5'- gGCCGCCGa------GgaGGCCCGGCUg -3'
miRNA:   3'- -CGGCGGCcuaggagCgaCCGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 27381 0.68 0.237098
Target:  5'- uGCCGUCuacaggCCUgCGCUGagguucaaGCCCGGCCu -3'
miRNA:   3'- -CGGCGGccua--GGA-GCGAC--------CGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 27864 0.78 0.040895
Target:  5'- cGCgCGCUucGUCCUCGCUGGCguagCCGGCCa -3'
miRNA:   3'- -CG-GCGGccUAGGAGCGACCG----GGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.