Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12321 | 3' | -64.4 | NC_003324.1 | + | 1592 | 1.12 | 0.000093 |
Target: 5'- uGCCGCCGGAUCCUCGCUGGCCCGGCCg -3' miRNA: 3'- -CGGCGGCCUAGGAGCGACCGGGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 5253 | 0.65 | 0.33489 |
Target: 5'- gGCCGCCGcaccagcggcaggcGAUauccucgaUCUCGCUaugauCCCGGCCg -3' miRNA: 3'- -CGGCGGC--------------CUA--------GGAGCGAcc---GGGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 5556 | 0.67 | 0.287009 |
Target: 5'- uGCCGCCGcaacCUUCGCcgcgGGCgucaUCGGCCu -3' miRNA: 3'- -CGGCGGCcua-GGAGCGa---CCG----GGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 6395 | 0.68 | 0.237098 |
Target: 5'- gGCCaGCgGauguGAUCCUCgucgagaaGCUGGauaCCGGCCa -3' miRNA: 3'- -CGG-CGgC----CUAGGAG--------CGACCg--GGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 12203 | 0.72 | 0.116556 |
Target: 5'- aGCCGCCGGAcggUCUCGCgGGUCUcGCa -3' miRNA: 3'- -CGGCGGCCUa--GGAGCGaCCGGGcCGg -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 13097 | 0.67 | 0.269934 |
Target: 5'- cGCCGCCGacgcagCCUCGCUGacgguuagcaucuucGCCgaCGGCa -3' miRNA: 3'- -CGGCGGCcua---GGAGCGAC---------------CGG--GCCGg -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 13369 | 0.68 | 0.225261 |
Target: 5'- cGCUGCCguacggaucgaGGAUCUgcaggaaUUGCUGcaGCUCGGCCa -3' miRNA: 3'- -CGGCGG-----------CCUAGG-------AGCGAC--CGGGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 13942 | 0.7 | 0.171646 |
Target: 5'- uGCCGuuGGcUCCcaucucgauUCGCUGGaaaaCgGGCCg -3' miRNA: 3'- -CGGCggCCuAGG---------AGCGACCg---GgCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 14467 | 0.68 | 0.225813 |
Target: 5'- aUCGgCGGA-CCUUGCUGGCaCCGucgcggaaGCCg -3' miRNA: 3'- cGGCgGCCUaGGAGCGACCG-GGC--------CGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 14662 | 0.7 | 0.159028 |
Target: 5'- cGCCGCCGGccgCUUgCGCcGGCa-GGCCg -3' miRNA: 3'- -CGGCGGCCua-GGA-GCGaCCGggCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 16335 | 0.66 | 0.292431 |
Target: 5'- cGUCGCgGGuuuguuagggcCCUgCGCUGGCCgcgucggcaCGGCCu -3' miRNA: 3'- -CGGCGgCCua---------GGA-GCGACCGG---------GCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 18292 | 0.68 | 0.231398 |
Target: 5'- -aCGCgCGGGcaaUCGCUGcCCCGGCCu -3' miRNA: 3'- cgGCG-GCCUaggAGCGACcGGGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 18488 | 0.66 | 0.307044 |
Target: 5'- cGUCGCCuucguguGGuUCCUCGCagGGUCCGucagcgcuGCCa -3' miRNA: 3'- -CGGCGG-------CCuAGGAGCGa-CCGGGC--------CGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 18856 | 0.66 | 0.293799 |
Target: 5'- cGuuGCCGaGAUCgaggagcugCUCGUgGGCuCCGGCg -3' miRNA: 3'- -CggCGGC-CUAG---------GAGCGaCCG-GGCCGg -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 19067 | 0.69 | 0.18515 |
Target: 5'- aGCCGCCGuauuUCC-CGCUcGGUcguuUCGGCCg -3' miRNA: 3'- -CGGCGGCcu--AGGaGCGA-CCG----GGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 21848 | 0.67 | 0.280343 |
Target: 5'- uGUCGCCGGAcgaguUCCUCGCccugcaGaGCCCGuuCu -3' miRNA: 3'- -CGGCGGCCU-----AGGAGCGa-----C-CGGGCcgG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 21852 | 0.71 | 0.139851 |
Target: 5'- cGCaGCCGGGccUCCUCgGC-GGCCUuGGCCu -3' miRNA: 3'- -CGgCGGCCU--AGGAG-CGaCCGGG-CCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 21931 | 0.66 | 0.300714 |
Target: 5'- gGCCGCCGa------GgaGGCCCGGCUg -3' miRNA: 3'- -CGGCGGCcuaggagCgaCCGGGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 27381 | 0.68 | 0.237098 |
Target: 5'- uGCCGUCuacaggCCUgCGCUGagguucaaGCCCGGCCu -3' miRNA: 3'- -CGGCGGccua--GGA-GCGAC--------CGGGCCGG- -5' |
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12321 | 3' | -64.4 | NC_003324.1 | + | 27864 | 0.78 | 0.040895 |
Target: 5'- cGCgCGCUucGUCCUCGCUGGCguagCCGGCCa -3' miRNA: 3'- -CG-GCGGccUAGGAGCGACCG----GGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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