miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12321 3' -64.4 NC_003324.1 + 43724 0.66 0.293799
Target:  5'- uGCUGCCaaucgGGAUCagggUCGCgacugugaaaGGCCCGGUa -3'
miRNA:   3'- -CGGCGG-----CCUAGg---AGCGa---------CCGGGCCGg -5'
12321 3' -64.4 NC_003324.1 + 27381 0.68 0.237098
Target:  5'- uGCCGUCuacaggCCUgCGCUGagguucaaGCCCGGCCu -3'
miRNA:   3'- -CGGCGGccua--GGA-GCGAC--------CGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 32107 0.68 0.249453
Target:  5'- cGUCGCCGGugaggCCgagugccuuggucucCGCcucgGGCCgGGCCg -3'
miRNA:   3'- -CGGCGGCCua---GGa--------------GCGa---CCGGgCCGG- -5'
12321 3' -64.4 NC_003324.1 + 40042 0.67 0.254908
Target:  5'- aGCuCGUCGGccGUCCaccguaguugCGCgGGUCUGGCCg -3'
miRNA:   3'- -CG-GCGGCC--UAGGa---------GCGaCCGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 30063 0.67 0.254908
Target:  5'- cGCCGCCGG----UCGCgacaCCGGCCg -3'
miRNA:   3'- -CGGCGGCCuaggAGCGaccgGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 13097 0.67 0.269934
Target:  5'- cGCCGCCGacgcagCCUCGCUGacgguuagcaucuucGCCgaCGGCa -3'
miRNA:   3'- -CGGCGGCcua---GGAGCGAC---------------CGG--GCCGg -5'
12321 3' -64.4 NC_003324.1 + 33367 0.67 0.273801
Target:  5'- gGuuGCCGGcUCCgcgCGCaacUCCGGCCa -3'
miRNA:   3'- -CggCGGCCuAGGa--GCGaccGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 34410 0.67 0.273801
Target:  5'- cGCCGCCG--UCCUCgGCaucGGUgaugUCGGCCg -3'
miRNA:   3'- -CGGCGGCcuAGGAG-CGa--CCG----GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 5556 0.67 0.287009
Target:  5'- uGCCGCCGcaacCUUCGCcgcgGGCgucaUCGGCCu -3'
miRNA:   3'- -CGGCGGCcua-GGAGCGa---CCG----GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 18292 0.68 0.231398
Target:  5'- -aCGCgCGGGcaaUCGCUGcCCCGGCCu -3'
miRNA:   3'- cgGCG-GCCUaggAGCGACcGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 14467 0.68 0.225813
Target:  5'- aUCGgCGGA-CCUUGCUGGCaCCGucgcggaaGCCg -3'
miRNA:   3'- cGGCgGCCUaGGAGCGACCG-GGC--------CGG- -5'
12321 3' -64.4 NC_003324.1 + 13369 0.68 0.225261
Target:  5'- cGCUGCCguacggaucgaGGAUCUgcaggaaUUGCUGcaGCUCGGCCa -3'
miRNA:   3'- -CGGCGG-----------CCUAGG-------AGCGAC--CGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 54425 0.73 0.107723
Target:  5'- cGCUGCCGGG-CCUCGaCUGGgucauagCCGGCg -3'
miRNA:   3'- -CGGCGGCCUaGGAGC-GACCg------GGCCGg -5'
12321 3' -64.4 NC_003324.1 + 12203 0.72 0.116556
Target:  5'- aGCCGCCGGAcggUCUCGCgGGUCUcGCa -3'
miRNA:   3'- -CGGCGGCCUa--GGAGCGaCCGGGcCGg -5'
12321 3' -64.4 NC_003324.1 + 31147 0.72 0.116556
Target:  5'- cGCUGCaGGccugCCUCGCggagcuGCCCGGCCu -3'
miRNA:   3'- -CGGCGgCCua--GGAGCGac----CGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 21852 0.71 0.139851
Target:  5'- cGCaGCCGGGccUCCUCgGC-GGCCUuGGCCu -3'
miRNA:   3'- -CGgCGGCCU--AGGAG-CGaCCGGG-CCGG- -5'
12321 3' -64.4 NC_003324.1 + 32319 0.7 0.163138
Target:  5'- cGCCGCaucucCGGAUCCU-GCaUGGCCU-GCCu -3'
miRNA:   3'- -CGGCG-----GCCUAGGAgCG-ACCGGGcCGG- -5'
12321 3' -64.4 NC_003324.1 + 13942 0.7 0.171646
Target:  5'- uGCCGuuGGcUCCcaucucgauUCGCUGGaaaaCgGGCCg -3'
miRNA:   3'- -CGGCggCCuAGG---------AGCGACCg---GgCCGG- -5'
12321 3' -64.4 NC_003324.1 + 29977 0.69 0.194666
Target:  5'- gGCaGCCGGGUCCgcaUCGau--CCCGGCCg -3'
miRNA:   3'- -CGgCGGCCUAGG---AGCgaccGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 30669 0.69 0.204608
Target:  5'- aGCUGCgCGGAUCg-CGCcacGCCgGGCCa -3'
miRNA:   3'- -CGGCG-GCCUAGgaGCGac-CGGgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.