miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12321 3' -64.4 NC_003324.1 + 1592 1.12 0.000093
Target:  5'- uGCCGCCGGAUCCUCGCUGGCCCGGCCg -3'
miRNA:   3'- -CGGCGGCCUAGGAGCGACCGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 27864 0.78 0.040895
Target:  5'- cGCgCGCUucGUCCUCGCUGGCguagCCGGCCa -3'
miRNA:   3'- -CG-GCGGccUAGGAGCGACCG----GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 42955 0.77 0.053694
Target:  5'- gGUCGCa-GAUCCUCGC-GGgCCGGCCg -3'
miRNA:   3'- -CGGCGgcCUAGGAGCGaCCgGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 42754 0.75 0.070348
Target:  5'- gGuuGCCGG-UCCUgG-UGGCCCGGCg -3'
miRNA:   3'- -CggCGGCCuAGGAgCgACCGGGCCGg -5'
12321 3' -64.4 NC_003324.1 + 54425 0.73 0.107723
Target:  5'- cGCUGCCGGG-CCUCGaCUGGgucauagCCGGCg -3'
miRNA:   3'- -CGGCGGCCUaGGAGC-GACCg------GGCCGg -5'
12321 3' -64.4 NC_003324.1 + 12203 0.72 0.116556
Target:  5'- aGCCGCCGGAcggUCUCGCgGGUCUcGCa -3'
miRNA:   3'- -CGGCGGCCUa--GGAGCGaCCGGGcCGg -5'
12321 3' -64.4 NC_003324.1 + 31147 0.72 0.116556
Target:  5'- cGCUGCaGGccugCCUCGCggagcuGCCCGGCCu -3'
miRNA:   3'- -CGGCGgCCua--GGAGCGac----CGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 54516 0.71 0.132791
Target:  5'- cGCCGCCGGcuaugaCCcagUCGa-GGCCCGGCa -3'
miRNA:   3'- -CGGCGGCCua----GG---AGCgaCCGGGCCGg -5'
12321 3' -64.4 NC_003324.1 + 35898 0.71 0.139851
Target:  5'- aGCUGCUGGG-Caa-GCUGGCuCCGGUCa -3'
miRNA:   3'- -CGGCGGCCUaGgagCGACCG-GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 21852 0.71 0.139851
Target:  5'- cGCaGCCGGGccUCCUCgGC-GGCCUuGGCCu -3'
miRNA:   3'- -CGgCGGCCU--AGGAG-CGaCCGGG-CCGG- -5'
12321 3' -64.4 NC_003324.1 + 14662 0.7 0.159028
Target:  5'- cGCCGCCGGccgCUUgCGCcGGCa-GGCCg -3'
miRNA:   3'- -CGGCGGCCua-GGA-GCGaCCGggCCGG- -5'
12321 3' -64.4 NC_003324.1 + 32319 0.7 0.163138
Target:  5'- cGCCGCaucucCGGAUCCU-GCaUGGCCU-GCCu -3'
miRNA:   3'- -CGGCG-----GCCUAGGAgCG-ACCGGGcCGG- -5'
12321 3' -64.4 NC_003324.1 + 13942 0.7 0.171646
Target:  5'- uGCCGuuGGcUCCcaucucgauUCGCUGGaaaaCgGGCCg -3'
miRNA:   3'- -CGGCggCCuAGG---------AGCGACCg---GgCCGG- -5'
12321 3' -64.4 NC_003324.1 + 19067 0.69 0.18515
Target:  5'- aGCCGCCGuauuUCC-CGCUcGGUcguuUCGGCCg -3'
miRNA:   3'- -CGGCGGCcu--AGGaGCGA-CCG----GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 29977 0.69 0.194666
Target:  5'- gGCaGCCGGGUCCgcaUCGau--CCCGGCCg -3'
miRNA:   3'- -CGgCGGCCUAGG---AGCgaccGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 30669 0.69 0.204608
Target:  5'- aGCUGCgCGGAUCg-CGCcacGCCgGGCCa -3'
miRNA:   3'- -CGGCG-GCCUAGgaGCGac-CGGgCCGG- -5'
12321 3' -64.4 NC_003324.1 + 51598 0.69 0.204608
Target:  5'- aGCCaCCGGccauguucGUCCUCGUcuGCCCGGUa -3'
miRNA:   3'- -CGGcGGCC--------UAGGAGCGacCGGGCCGg -5'
12321 3' -64.4 NC_003324.1 + 13369 0.68 0.225261
Target:  5'- cGCUGCCguacggaucgaGGAUCUgcaggaaUUGCUGcaGCUCGGCCa -3'
miRNA:   3'- -CGGCGG-----------CCUAGG-------AGCGAC--CGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 14467 0.68 0.225813
Target:  5'- aUCGgCGGA-CCUUGCUGGCaCCGucgcggaaGCCg -3'
miRNA:   3'- cGGCgGCCUaGGAGCGACCG-GGC--------CGG- -5'
12321 3' -64.4 NC_003324.1 + 18292 0.68 0.231398
Target:  5'- -aCGCgCGGGcaaUCGCUGcCCCGGCCu -3'
miRNA:   3'- cgGCG-GCCUaggAGCGACcGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.