miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12321 3' -64.4 NC_003324.1 + 5253 0.65 0.33489
Target:  5'- gGCCGCCGcaccagcggcaggcGAUauccucgaUCUCGCUaugauCCCGGCCg -3'
miRNA:   3'- -CGGCGGC--------------CUA--------GGAGCGAcc---GGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 30037 0.66 0.322209
Target:  5'- uGCCGCCgcuacgcaGGAcgccCCUCGCccGUCCGGaCCg -3'
miRNA:   3'- -CGGCGG--------CCUa---GGAGCGacCGGGCC-GG- -5'
12321 3' -64.4 NC_003324.1 + 31247 0.66 0.322209
Target:  5'- cGCCGCCGGccgcacugcgcGUUUUUGCggcGGCgaCGGCUu -3'
miRNA:   3'- -CGGCGGCC-----------UAGGAGCGa--CCGg-GCCGG- -5'
12321 3' -64.4 NC_003324.1 + 28613 0.66 0.307754
Target:  5'- cGCUGUCGc--CCUCG-UGGCCCGGaUCg -3'
miRNA:   3'- -CGGCGGCcuaGGAGCgACCGGGCC-GG- -5'
12321 3' -64.4 NC_003324.1 + 18488 0.66 0.307044
Target:  5'- cGUCGCCuucguguGGuUCCUCGCagGGUCCGucagcgcuGCCa -3'
miRNA:   3'- -CGGCGG-------CCuAGGAGCGa-CCGGGC--------CGG- -5'
12321 3' -64.4 NC_003324.1 + 21931 0.66 0.300714
Target:  5'- gGCCGCCGa------GgaGGCCCGGCUg -3'
miRNA:   3'- -CGGCGGCcuaggagCgaCCGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 56060 0.66 0.29655
Target:  5'- gGCCGUCGGcuUCCagGCUGGCgaacCCgcgauggagcucgcuGGCCa -3'
miRNA:   3'- -CGGCGGCCu-AGGagCGACCG----GG---------------CCGG- -5'
12321 3' -64.4 NC_003324.1 + 18856 0.66 0.293799
Target:  5'- cGuuGCCGaGAUCgaggagcugCUCGUgGGCuCCGGCg -3'
miRNA:   3'- -CggCGGC-CUAG---------GAGCGaCCG-GGCCGg -5'
12321 3' -64.4 NC_003324.1 + 43724 0.66 0.293799
Target:  5'- uGCUGCCaaucgGGAUCagggUCGCgacugugaaaGGCCCGGUa -3'
miRNA:   3'- -CGGCGG-----CCUAGg---AGCGa---------CCGGGCCGg -5'
12321 3' -64.4 NC_003324.1 + 16335 0.66 0.292431
Target:  5'- cGUCGCgGGuuuguuagggcCCUgCGCUGGCCgcgucggcaCGGCCu -3'
miRNA:   3'- -CGGCGgCCua---------GGA-GCGACCGG---------GCCGG- -5'
12321 3' -64.4 NC_003324.1 + 5556 0.67 0.287009
Target:  5'- uGCCGCCGcaacCUUCGCcgcgGGCgucaUCGGCCu -3'
miRNA:   3'- -CGGCGGCcua-GGAGCGa---CCG----GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 21848 0.67 0.280343
Target:  5'- uGUCGCCGGAcgaguUCCUCGCccugcaGaGCCCGuuCu -3'
miRNA:   3'- -CGGCGGCCU-----AGGAGCGa-----C-CGGGCcgG- -5'
12321 3' -64.4 NC_003324.1 + 33367 0.67 0.273801
Target:  5'- gGuuGCCGGcUCCgcgCGCaacUCCGGCCa -3'
miRNA:   3'- -CggCGGCCuAGGa--GCGaccGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 34410 0.67 0.273801
Target:  5'- cGCCGCCG--UCCUCgGCaucGGUgaugUCGGCCg -3'
miRNA:   3'- -CGGCGGCcuAGGAG-CGa--CCG----GGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 13097 0.67 0.269934
Target:  5'- cGCCGCCGacgcagCCUCGCUGacgguuagcaucuucGCCgaCGGCa -3'
miRNA:   3'- -CGGCGGCcua---GGAGCGAC---------------CGG--GCCGg -5'
12321 3' -64.4 NC_003324.1 + 40042 0.67 0.254908
Target:  5'- aGCuCGUCGGccGUCCaccguaguugCGCgGGUCUGGCCg -3'
miRNA:   3'- -CG-GCGGCC--UAGGa---------GCGaCCGGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 30063 0.67 0.254908
Target:  5'- cGCCGCCGG----UCGCgacaCCGGCCg -3'
miRNA:   3'- -CGGCGGCCuaggAGCGaccgGGCCGG- -5'
12321 3' -64.4 NC_003324.1 + 32107 0.68 0.249453
Target:  5'- cGUCGCCGGugaggCCgagugccuuggucucCGCcucgGGCCgGGCCg -3'
miRNA:   3'- -CGGCGGCCua---GGa--------------GCGa---CCGGgCCGG- -5'
12321 3' -64.4 NC_003324.1 + 31317 0.68 0.248853
Target:  5'- uGCgGCCGGcgg--CGCUGGCgCUGGCg -3'
miRNA:   3'- -CGgCGGCCuaggaGCGACCG-GGCCGg -5'
12321 3' -64.4 NC_003324.1 + 27381 0.68 0.237098
Target:  5'- uGCCGUCuacaggCCUgCGCUGagguucaaGCCCGGCCu -3'
miRNA:   3'- -CGGCGGccua--GGA-GCGAC--------CGGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.