Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12322 | 3' | -60.4 | NC_003324.1 | + | 16909 | 0.66 | 0.448368 |
Target: 5'- uUUGCAaggUGGCGGcugccaGCGUCACCGAuagaucgguuccgccAGCa -3' miRNA: 3'- cGACGU---ACCGCC------CGCGGUGGCU---------------UCGc -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 12037 | 0.66 | 0.454085 |
Target: 5'- uGCuUGCcgGGCaGGGCGCCGacucuucuCCGaAAGaCGu -3' miRNA: 3'- -CG-ACGuaCCG-CCCGCGGU--------GGC-UUC-GC- -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 40319 | 0.66 | 0.47342 |
Target: 5'- gGCgGCAgucGaGCGGGaGCCagcACCGAAGCc -3' miRNA: 3'- -CGaCGUa--C-CGCCCgCGG---UGGCUUCGc -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 6042 | 0.66 | 0.435186 |
Target: 5'- cGCUGCAUagccauucGGCGGGUaguucGCUGCCuGAuagccagcAGCGa -3' miRNA: 3'- -CGACGUA--------CCGCCCG-----CGGUGG-CU--------UCGC- -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 28509 | 0.66 | 0.429606 |
Target: 5'- --gGCAacGCGGGCGCCcuucggaccgagaccACUGAGGCc -3' miRNA: 3'- cgaCGUacCGCCCGCGG---------------UGGCUUCGc -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 48805 | 0.66 | 0.425909 |
Target: 5'- --aGCc-GGaaGGUGCCACCGAGGCc -3' miRNA: 3'- cgaCGuaCCgcCCGCGGUGGCUUCGc -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 27375 | 0.66 | 0.443635 |
Target: 5'- cGCgaagGCAaggGGCGGgaaauccGCGCCACCaacgcgGAAGCc -3' miRNA: 3'- -CGa---CGUa--CCGCC-------CGCGGUGG------CUUCGc -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 38319 | 0.67 | 0.378778 |
Target: 5'- uGCaGCAUGucuuUGGGCGUcucgaucacgagggCACCGggGCGg -3' miRNA: 3'- -CGaCGUACc---GCCCGCG--------------GUGGCuuCGC- -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 30453 | 0.67 | 0.3988 |
Target: 5'- gGCgGCAUGGCcgaGGGCgacGCCAUCaAGGCu -3' miRNA: 3'- -CGaCGUACCG---CCCG---CGGUGGcUUCGc -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 22208 | 0.67 | 0.390012 |
Target: 5'- -aUGU-UGGUGGGCuuGCCGCCGcgcaccuucggGAGCGg -3' miRNA: 3'- cgACGuACCGCCCG--CGGUGGC-----------UUCGC- -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 8274 | 0.68 | 0.36442 |
Target: 5'- -gUGCcaGGCGcGCGCCGCCGGgcAGUGa -3' miRNA: 3'- cgACGuaCCGCcCGCGGUGGCU--UCGC- -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 12494 | 0.68 | 0.363587 |
Target: 5'- uGCUGCAUcgaaucgGGaUGGGUGCCGgCG-AGCa -3' miRNA: 3'- -CGACGUA-------CC-GCCCGCGGUgGCuUCGc -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 20615 | 0.68 | 0.332146 |
Target: 5'- uGUUGCcgGcGCugauGGGCGCUugCGGucGGCGg -3' miRNA: 3'- -CGACGuaC-CG----CCCGCGGugGCU--UCGC- -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 23521 | 0.69 | 0.316814 |
Target: 5'- aGCgacgGCAagacugUGGUcaaccaGGGCGCCACCGc-GCGg -3' miRNA: 3'- -CGa---CGU------ACCG------CCCGCGGUGGCuuCGC- -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 5491 | 0.69 | 0.30935 |
Target: 5'- cGCcGCAgGuGCGGGCGCCAucuuCCGAGcCGa -3' miRNA: 3'- -CGaCGUaC-CGCCCGCGGU----GGCUUcGC- -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 3629 | 0.69 | 0.316814 |
Target: 5'- gGCUGCAuagcccuucuUGGCGGGgGCCucGuuGAGGg- -3' miRNA: 3'- -CGACGU----------ACCGCCCgCGG--UggCUUCgc -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 30468 | 0.69 | 0.30935 |
Target: 5'- cGUUGCG-GGuCGaaucGGCGCCGCCG-AGCa -3' miRNA: 3'- -CGACGUaCC-GC----CCGCGGUGGCuUCGc -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 49967 | 0.69 | 0.287767 |
Target: 5'- --aGCAUGGCGaucGGCGCUGCCcugaugGggGCa -3' miRNA: 3'- cgaCGUACCGC---CCGCGGUGG------CuuCGc -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 21101 | 0.69 | 0.285675 |
Target: 5'- uGCUGCGUcggcuuccacgucgGGCuGGCGCUugCGcAGCa -3' miRNA: 3'- -CGACGUA--------------CCGcCCGCGGugGCuUCGc -5' |
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12322 | 3' | -60.4 | NC_003324.1 | + | 5710 | 0.7 | 0.274047 |
Target: 5'- -aUGCAccGCGGGCGCaACCGAaaccuccguuGGCGg -3' miRNA: 3'- cgACGUacCGCCCGCGgUGGCU----------UCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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