Results 61 - 80 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 48755 | 0.68 | 0.623416 |
Target: 5'- aGGUGAUGCcgAGAUGCgCAGCCaGCGu -3' miRNA: 3'- -UCGCUGUGuaUUUGCG-GUCGGcCGUg -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 26017 | 0.67 | 0.633445 |
Target: 5'- gGGUGACugAgcgcgccaauGGCGUCAccggucuGCCGGCGCu -3' miRNA: 3'- -UCGCUGugUau--------UUGCGGU-------CGGCCGUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 48467 | 0.67 | 0.644587 |
Target: 5'- cAGCcgaGCAgGUAGGCGCCaagggcaacugcgAGCCGGCu- -3' miRNA: 3'- -UCGc--UGUgUAUUUGCGG-------------UCGGCCGug -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 53384 | 0.67 | 0.631216 |
Target: 5'- cGGCGACcgAUAGuucuuucucaagccGCGaCCGGCgGGCGCg -3' miRNA: 3'- -UCGCUGugUAUU--------------UGC-GGUCGgCCGUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 1543 | 0.67 | 0.666824 |
Target: 5'- cGCGGCGCuauggccccgAUGAagaaaggGCGCCAGCCcGCGa -3' miRNA: 3'- uCGCUGUG----------UAUU-------UGCGGUCGGcCGUg -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 23547 | 0.67 | 0.656829 |
Target: 5'- cAGCGugGCGgcgggcGCGCuCGGCgaCGGUACa -3' miRNA: 3'- -UCGCugUGUauu---UGCG-GUCG--GCCGUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 47469 | 0.67 | 0.6457 |
Target: 5'- uGGCGAUGCGUAGAUGguCCuGCaucaacugCGGCGCa -3' miRNA: 3'- -UCGCUGUGUAUUUGC--GGuCG--------GCCGUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 4009 | 0.67 | 0.679004 |
Target: 5'- uGGCGAUGCA--AAgGCCcaaaagaaguGGuCCGGCGCg -3' miRNA: 3'- -UCGCUGUGUauUUgCGG----------UC-GGCCGUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 26719 | 0.67 | 0.667933 |
Target: 5'- uGCGACGCAgcaGGGCGCgGGCCuuuucuGCAg -3' miRNA: 3'- uCGCUGUGUa--UUUGCGgUCGGc-----CGUg -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 31699 | 0.67 | 0.634559 |
Target: 5'- cGCGAgugggUGCAUGccAACGCCAGCCGuuAUg -3' miRNA: 3'- uCGCU-----GUGUAU--UUGCGGUCGGCcgUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 13175 | 0.67 | 0.656829 |
Target: 5'- cAGCGAggcUGCGUcgGCGgCGGUCGGCGg -3' miRNA: 3'- -UCGCU---GUGUAuuUGCgGUCGGCCGUg -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 30133 | 0.67 | 0.6457 |
Target: 5'- cGCGACcggcgGCGUGAugGgCGGC-GGCAUg -3' miRNA: 3'- uCGCUG-----UGUAUUugCgGUCGgCCGUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 29714 | 0.67 | 0.6457 |
Target: 5'- aGGCGGCgGCGUu-GCGCCAGaagcaGGCAg -3' miRNA: 3'- -UCGCUG-UGUAuuUGCGGUCgg---CCGUg -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 2695 | 0.66 | 0.690029 |
Target: 5'- cAGCGGCAaggGUGAGgcucUGCUAGCCGGauuuGCg -3' miRNA: 3'- -UCGCUGUg--UAUUU----GCGGUCGGCCg---UG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 48832 | 0.66 | 0.700997 |
Target: 5'- gAGCGcuuCGC-UGAugGCCugcagccuGCUGGCGCc -3' miRNA: 3'- -UCGCu--GUGuAUUugCGGu-------CGGCCGUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 23934 | 0.66 | 0.744063 |
Target: 5'- uGCucUACA-AGACGCCGGCCGGaaacUACg -3' miRNA: 3'- uCGcuGUGUaUUUGCGGUCGGCC----GUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 54375 | 0.66 | 0.740888 |
Target: 5'- cAGaCGGCGCA--GACGCaggccuuccagcaaCGGCuCGGCGCu -3' miRNA: 3'- -UC-GCUGUGUauUUGCG--------------GUCG-GCCGUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 29872 | 0.66 | 0.73344 |
Target: 5'- cGCGACuguGCGUGugGACGCCgagggauuggAGCCgauccuugGGCGCa -3' miRNA: 3'- uCGCUG---UGUAU--UUGCGG----------UCGG--------CCGUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 35591 | 0.66 | 0.711896 |
Target: 5'- cGGUG-CGCAgaagucGGCGCuggaagCAGCCGGUACg -3' miRNA: 3'- -UCGCuGUGUau----UUGCG------GUCGGCCGUG- -5' |
|||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 10708 | 0.66 | 0.690029 |
Target: 5'- uAGCGACACGgagccACgGCCAGCguugGGCGa -3' miRNA: 3'- -UCGCUGUGUauu--UG-CGGUCGg---CCGUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home