miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 31311 0.74 0.286996
Target:  5'- cGGCGGCGCu--GGCGCUGGCgGGgGCa -3'
miRNA:   3'- -UCGCUGUGuauUUGCGGUCGgCCgUG- -5'
12326 5' -54.8 NC_003324.1 + 31699 0.67 0.634559
Target:  5'- cGCGAgugggUGCAUGccAACGCCAGCCGuuAUg -3'
miRNA:   3'- uCGCU-----GUGUAU--UUGCGGUCGGCcgUG- -5'
12326 5' -54.8 NC_003324.1 + 31765 0.7 0.503341
Target:  5'- uGGgGGCGCc--AACGCCuGCCGGCc- -3'
miRNA:   3'- -UCgCUGUGuauUUGCGGuCGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 32121 0.68 0.61228
Target:  5'- -uCGGC-CGUGAGcCGCC-GCCGGCAg -3'
miRNA:   3'- ucGCUGuGUAUUU-GCGGuCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 32578 0.7 0.462049
Target:  5'- gAGCGACAucgucgacacCGUGAuCGCCGaggcuGCCGGCGa -3'
miRNA:   3'- -UCGCUGU----------GUAUUuGCGGU-----CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 35591 0.66 0.711896
Target:  5'- cGGUG-CGCAgaagucGGCGCuggaagCAGCCGGUACg -3'
miRNA:   3'- -UCGCuGUGUau----UUGCG------GUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 36755 0.72 0.394392
Target:  5'- uGCGAgGCccgugGAGCGCUGGCCGGUg- -3'
miRNA:   3'- uCGCUgUGua---UUUGCGGUCGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 37241 0.71 0.403662
Target:  5'- cGCGGCGCAaggaAGACGacaAGCCGGCGg -3'
miRNA:   3'- uCGCUGUGUa---UUUGCgg-UCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 37415 0.68 0.588965
Target:  5'- aGGCG-CACGUucuuguugcuaucGAGCGCauuGCCGcGCACa -3'
miRNA:   3'- -UCGCuGUGUA-------------UUUGCGgu-CGGC-CGUG- -5'
12326 5' -54.8 NC_003324.1 + 38088 0.7 0.503341
Target:  5'- uGGCGaaGCGCGUcgGCGCCGuGCUGGUg- -3'
miRNA:   3'- -UCGC--UGUGUAuuUGCGGU-CGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 38162 0.7 0.503341
Target:  5'- cGcCGACGCGcuu-CGCCAGaaGGCGCa -3'
miRNA:   3'- uC-GCUGUGUauuuGCGGUCggCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 39762 0.69 0.535333
Target:  5'- cGGCGGCACGUGcucGAUGaucuCGGCaCGGUGCa -3'
miRNA:   3'- -UCGCUGUGUAU---UUGCg---GUCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 40496 0.7 0.461039
Target:  5'- aGGCGACGacgAAGCGCCAgacgaaggcgaagGCCGGUg- -3'
miRNA:   3'- -UCGCUGUguaUUUGCGGU-------------CGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 41461 0.69 0.513918
Target:  5'- aGGCGGCAUugguaaggGGACGCgUAGCCacgGGCGCu -3'
miRNA:   3'- -UCGCUGUGua------UUUGCG-GUCGG---CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 41856 0.66 0.690029
Target:  5'- --aGACAgCAUGAACGUCucGCCGGuCAUg -3'
miRNA:   3'- ucgCUGU-GUAUUUGCGGu-CGGCC-GUG- -5'
12326 5' -54.8 NC_003324.1 + 42917 0.66 0.744063
Target:  5'- gGGCGAC-CAUuGGCgGUCAcugcGCCGGCGg -3'
miRNA:   3'- -UCGCUGuGUAuUUG-CGGU----CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 43794 0.66 0.744063
Target:  5'- gGGUGcCGg--GAACGCCGGCaaGGCGCg -3'
miRNA:   3'- -UCGCuGUguaUUUGCGGUCGg-CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 43897 0.7 0.482482
Target:  5'- cGGCGGCcaucCGUGAuuucacGCGCCuuGCCGGCGu -3'
miRNA:   3'- -UCGCUGu---GUAUU------UGCGGu-CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 45695 0.69 0.546158
Target:  5'- cGGCGAgGCGUGAGCaggGCaaucaGGCgaCGGCACg -3'
miRNA:   3'- -UCGCUgUGUAUUUG---CGg----UCG--GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 47469 0.67 0.6457
Target:  5'- uGGCGAUGCGUAGAUGguCCuGCaucaacugCGGCGCa -3'
miRNA:   3'- -UCGCUGUGUAUUUGC--GGuCG--------GCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.