miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 24007 0.71 0.44208
Target:  5'- cGCGugAaccucGACGCCAuGUCGGCGCu -3'
miRNA:   3'- uCGCugUguau-UUGCGGU-CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 24310 0.68 0.61228
Target:  5'- aGGCGuCGCGgacGCGCaccauGCCGGCAa -3'
miRNA:   3'- -UCGCuGUGUauuUGCGgu---CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 24431 0.66 0.73344
Target:  5'- gGGCGAUGCGaacauuGCGCCGaCCuGCACg -3'
miRNA:   3'- -UCGCUGUGUauu---UGCGGUcGGcCGUG- -5'
12326 5' -54.8 NC_003324.1 + 24808 0.7 0.482482
Target:  5'- gGGCGACAagccugacacguCAUGGACGaaGGUCGGCGa -3'
miRNA:   3'- -UCGCUGU------------GUAUUUGCggUCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 25174 0.7 0.492861
Target:  5'- cGGCGccaACAUccAGACGCCAGUCGGguUu -3'
miRNA:   3'- -UCGCug-UGUA--UUUGCGGUCGGCCguG- -5'
12326 5' -54.8 NC_003324.1 + 25312 0.71 0.403662
Target:  5'- gGGCGGC-CAggugcucGAAcCGUCAGUCGGCGCa -3'
miRNA:   3'- -UCGCUGuGUa------UUU-GCGGUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 25711 0.68 0.61228
Target:  5'- uGCGugAUGUccaaucAGCaGCCGuGCCGGCGCa -3'
miRNA:   3'- uCGCugUGUAu-----UUG-CGGU-CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 26017 0.67 0.633445
Target:  5'- gGGUGACugAgcgcgccaauGGCGUCAccggucuGCCGGCGCu -3'
miRNA:   3'- -UCGCUGugUau--------UUGCGGU-------CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 26719 0.67 0.667933
Target:  5'- uGCGACGCAgcaGGGCGCgGGCCuuuucuGCAg -3'
miRNA:   3'- uCGCUGUGUa--UUUGCGgUCGGc-----CGUg -5'
12326 5' -54.8 NC_003324.1 + 26894 0.7 0.492861
Target:  5'- gAGCGGCGCcaaa--GCCAGCCaagcGCACg -3'
miRNA:   3'- -UCGCUGUGuauuugCGGUCGGc---CGUG- -5'
12326 5' -54.8 NC_003324.1 + 27060 0.69 0.535333
Target:  5'- cGCGACGCG---GCGUUaccguuguGGCCGGUGCg -3'
miRNA:   3'- uCGCUGUGUauuUGCGG--------UCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 27644 0.69 0.557053
Target:  5'- cGCGAaa-AUAuGCGUgAGCCGGCAg -3'
miRNA:   3'- uCGCUgugUAUuUGCGgUCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 28820 0.66 0.690029
Target:  5'- cGCGcucauuGCGCuu-GACGCCAGCCuguucgaGCACg -3'
miRNA:   3'- uCGC------UGUGuauUUGCGGUCGGc------CGUG- -5'
12326 5' -54.8 NC_003324.1 + 29032 0.71 0.44208
Target:  5'- gAGCGcuuGCuCAagcAGCGCCAGgCGGCACg -3'
miRNA:   3'- -UCGC---UGuGUau-UUGCGGUCgGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 29095 0.68 0.579018
Target:  5'- cAGCcaGACGCuu--GCGCuCuGCCGGCAUa -3'
miRNA:   3'- -UCG--CUGUGuauuUGCG-GuCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 29714 0.67 0.6457
Target:  5'- aGGCGGCgGCGUu-GCGCCAGaagcaGGCAg -3'
miRNA:   3'- -UCGCUG-UGUAuuUGCGGUCgg---CCGUg -5'
12326 5' -54.8 NC_003324.1 + 29872 0.66 0.73344
Target:  5'- cGCGACuguGCGUGugGACGCCgagggauuggAGCCgauccuugGGCGCa -3'
miRNA:   3'- uCGCUG---UGUAU--UUGCGG----------UCGG--------CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 29973 0.7 0.492861
Target:  5'- cGGCGGCagccggguccGCAUcGAUcCCGGCCGGUGCa -3'
miRNA:   3'- -UCGCUG----------UGUAuUUGcGGUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 30133 0.67 0.6457
Target:  5'- cGCGACcggcgGCGUGAugGgCGGC-GGCAUg -3'
miRNA:   3'- uCGCUG-----UGUAUUugCgGUCGgCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 30307 0.66 0.744063
Target:  5'- uGGCGuCGCuc-GGCGCguGCUGGCu- -3'
miRNA:   3'- -UCGCuGUGuauUUGCGguCGGCCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.