miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 14338 0.66 0.700997
Target:  5'- gAGCGAgGCAgcugcagAAGCGCgGGCCGacGUAUc -3'
miRNA:   3'- -UCGCUgUGUa------UUUGCGgUCGGC--CGUG- -5'
12326 5' -54.8 NC_003324.1 + 14529 0.66 0.744063
Target:  5'- cGcCGAUGCuUGGACGCCGGCaugGGCcCa -3'
miRNA:   3'- uC-GCUGUGuAUUUGCGGUCGg--CCGuG- -5'
12326 5' -54.8 NC_003324.1 + 14553 0.68 0.588965
Target:  5'- aGGcCGACguggucaACAUGGgucGCgGCCuGCCGGCGCa -3'
miRNA:   3'- -UC-GCUG-------UGUAUU---UG-CGGuCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 14599 0.7 0.462049
Target:  5'- cGGCGGCGCAggcgguAGCGUggCGGCCGGaGCu -3'
miRNA:   3'- -UCGCUGUGUau----UUGCG--GUCGGCCgUG- -5'
12326 5' -54.8 NC_003324.1 + 14797 0.72 0.385261
Target:  5'- cGCGGCGaa-GAACG-CGGCCGGCAUc -3'
miRNA:   3'- uCGCUGUguaUUUGCgGUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 15547 0.68 0.590072
Target:  5'- cGGCGACAUGgaAAGCGCCGaCCGGguUc -3'
miRNA:   3'- -UCGCUGUGUa-UUUGCGGUcGGCCguG- -5'
12326 5' -54.8 NC_003324.1 + 16639 0.69 0.539654
Target:  5'- cGGCGAgACgAUGAGCaGCCAgccccucacccucucGCCGaGCACg -3'
miRNA:   3'- -UCGCUgUG-UAUUUG-CGGU---------------CGGC-CGUG- -5'
12326 5' -54.8 NC_003324.1 + 17693 0.68 0.568009
Target:  5'- cGGCGGCAuCGUGcucAACGgCGcGCCGGgGCa -3'
miRNA:   3'- -UCGCUGU-GUAU---UUGCgGU-CGGCCgUG- -5'
12326 5' -54.8 NC_003324.1 + 17900 0.69 0.509676
Target:  5'- gGGCGACACcccgaaugcgcgccGUGAggcACGCUAccagaucGCCGGCAUc -3'
miRNA:   3'- -UCGCUGUG--------------UAUU---UGCGGU-------CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 18131 0.69 0.535333
Target:  5'- cAGCGGCGUGUAuucGACGCCGGuuucgccgacaCCGGCAa -3'
miRNA:   3'- -UCGCUGUGUAU---UUGCGGUC-----------GGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 19097 0.68 0.601163
Target:  5'- uGCGcauCGCGUucGAgGCCAGCCGcGUGCa -3'
miRNA:   3'- uCGCu--GUGUAu-UUgCGGUCGGC-CGUG- -5'
12326 5' -54.8 NC_003324.1 + 19375 0.68 0.590072
Target:  5'- cAGCGAUGgAUcGACGCCGGCgCGcGuCGCg -3'
miRNA:   3'- -UCGCUGUgUAuUUGCGGUCG-GC-C-GUG- -5'
12326 5' -54.8 NC_003324.1 + 19601 0.74 0.286996
Target:  5'- aAGCGGCugAUGGACGCCuucCgCGGCAa -3'
miRNA:   3'- -UCGCUGugUAUUUGCGGuc-G-GCCGUg -5'
12326 5' -54.8 NC_003324.1 + 20198 0.76 0.227055
Target:  5'- aGGCG-CGCGUAAcGCGCCcgguauGGCCGGCAg -3'
miRNA:   3'- -UCGCuGUGUAUU-UGCGG------UCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 20609 0.72 0.37538
Target:  5'- cGGCG-CugAUGGGCGCUugcggucGGCgGGCACg -3'
miRNA:   3'- -UCGCuGugUAUUUGCGG-------UCGgCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 21092 0.73 0.324565
Target:  5'- cGCGGCGCGUGcuGCGUCGGCUuccacgucgggcuGGCGCu -3'
miRNA:   3'- uCGCUGUGUAUu-UGCGGUCGG-------------CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 21963 0.7 0.452004
Target:  5'- cGGCGGCGCG---AUGCaccuuggAGCCGGCAUa -3'
miRNA:   3'- -UCGCUGUGUauuUGCGg------UCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 23150 0.71 0.403662
Target:  5'- uGGCGGCA----AACGUCuuGCCGGCGCc -3'
miRNA:   3'- -UCGCUGUguauUUGCGGu-CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 23547 0.67 0.656829
Target:  5'- cAGCGugGCGgcgggcGCGCuCGGCgaCGGUACa -3'
miRNA:   3'- -UCGCugUGUauu---UGCG-GUCG--GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 23934 0.66 0.744063
Target:  5'- uGCucUACA-AGACGCCGGCCGGaaacUACg -3'
miRNA:   3'- uCGcuGUGUaUUUGCGGUCGGCC----GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.