miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 40496 0.7 0.461039
Target:  5'- aGGCGACGacgAAGCGCCAgacgaaggcgaagGCCGGUg- -3'
miRNA:   3'- -UCGCUGUguaUUUGCGGU-------------CGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 39762 0.69 0.535333
Target:  5'- cGGCGGCACGUGcucGAUGaucuCGGCaCGGUGCa -3'
miRNA:   3'- -UCGCUGUGUAU---UUGCg---GUCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 38162 0.7 0.503341
Target:  5'- cGcCGACGCGcuu-CGCCAGaaGGCGCa -3'
miRNA:   3'- uC-GCUGUGUauuuGCGGUCggCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 38088 0.7 0.503341
Target:  5'- uGGCGaaGCGCGUcgGCGCCGuGCUGGUg- -3'
miRNA:   3'- -UCGC--UGUGUAuuUGCGGU-CGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 37415 0.68 0.588965
Target:  5'- aGGCG-CACGUucuuguugcuaucGAGCGCauuGCCGcGCACa -3'
miRNA:   3'- -UCGCuGUGUA-------------UUUGCGgu-CGGC-CGUG- -5'
12326 5' -54.8 NC_003324.1 + 37241 0.71 0.403662
Target:  5'- cGCGGCGCAaggaAGACGacaAGCCGGCGg -3'
miRNA:   3'- uCGCUGUGUa---UUUGCgg-UCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 36755 0.72 0.394392
Target:  5'- uGCGAgGCccgugGAGCGCUGGCCGGUg- -3'
miRNA:   3'- uCGCUgUGua---UUUGCGGUCGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 35591 0.66 0.711896
Target:  5'- cGGUG-CGCAgaagucGGCGCuggaagCAGCCGGUACg -3'
miRNA:   3'- -UCGCuGUGUau----UUGCG------GUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 32578 0.7 0.462049
Target:  5'- gAGCGACAucgucgacacCGUGAuCGCCGaggcuGCCGGCGa -3'
miRNA:   3'- -UCGCUGU----------GUAUUuGCGGU-----CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 32121 0.68 0.61228
Target:  5'- -uCGGC-CGUGAGcCGCC-GCCGGCAg -3'
miRNA:   3'- ucGCUGuGUAUUU-GCGGuCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 31765 0.7 0.503341
Target:  5'- uGGgGGCGCc--AACGCCuGCCGGCc- -3'
miRNA:   3'- -UCgCUGUGuauUUGCGGuCGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 31699 0.67 0.634559
Target:  5'- cGCGAgugggUGCAUGccAACGCCAGCCGuuAUg -3'
miRNA:   3'- uCGCU-----GUGUAU--UUGCGGUCGGCcgUG- -5'
12326 5' -54.8 NC_003324.1 + 31311 0.74 0.286996
Target:  5'- cGGCGGCGCu--GGCGCUGGCgGGgGCa -3'
miRNA:   3'- -UCGCUGUGuauUUGCGGUCGgCCgUG- -5'
12326 5' -54.8 NC_003324.1 + 30307 0.66 0.744063
Target:  5'- uGGCGuCGCuc-GGCGCguGCUGGCu- -3'
miRNA:   3'- -UCGCuGUGuauUUGCGguCGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 30133 0.67 0.6457
Target:  5'- cGCGACcggcgGCGUGAugGgCGGC-GGCAUg -3'
miRNA:   3'- uCGCUG-----UGUAUUugCgGUCGgCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 29973 0.7 0.492861
Target:  5'- cGGCGGCagccggguccGCAUcGAUcCCGGCCGGUGCa -3'
miRNA:   3'- -UCGCUG----------UGUAuUUGcGGUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 29872 0.66 0.73344
Target:  5'- cGCGACuguGCGUGugGACGCCgagggauuggAGCCgauccuugGGCGCa -3'
miRNA:   3'- uCGCUG---UGUAU--UUGCGG----------UCGG--------CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 29714 0.67 0.6457
Target:  5'- aGGCGGCgGCGUu-GCGCCAGaagcaGGCAg -3'
miRNA:   3'- -UCGCUG-UGUAuuUGCGGUCgg---CCGUg -5'
12326 5' -54.8 NC_003324.1 + 29095 0.68 0.579018
Target:  5'- cAGCcaGACGCuu--GCGCuCuGCCGGCAUa -3'
miRNA:   3'- -UCG--CUGUGuauuUGCG-GuCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 29032 0.71 0.44208
Target:  5'- gAGCGcuuGCuCAagcAGCGCCAGgCGGCACg -3'
miRNA:   3'- -UCGC---UGuGUau-UUGCGGUCgGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.