miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 56803 0.74 0.282639
Target:  5'- uGCGGCGCAacgaacUGAACGCugcaagcgcgucauaCAGCCGGCGa -3'
miRNA:   3'- uCGCUGUGU------AUUUGCG---------------GUCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 54375 0.66 0.740888
Target:  5'- cAGaCGGCGCA--GACGCaggccuuccagcaaCGGCuCGGCGCu -3'
miRNA:   3'- -UC-GCUGUGUauUUGCG--------------GUCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 54248 0.66 0.722714
Target:  5'- cGCGGCACcgGu-UGCCauGGaCCGGCAUc -3'
miRNA:   3'- uCGCUGUGuaUuuGCGG--UC-GGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 53778 0.7 0.476305
Target:  5'- aGGCGuCGCAUGcguccAGCGCCuguuucgccguaucaAGCuCGGCGCu -3'
miRNA:   3'- -UCGCuGUGUAU-----UUGCGG---------------UCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 53661 0.71 0.446035
Target:  5'- uGCGGCACcuugGAGCGCCgAGCUugauacggcgaaacaGGCGCu -3'
miRNA:   3'- uCGCUGUGua--UUUGCGG-UCGG---------------CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 53384 0.67 0.631216
Target:  5'- cGGCGACcgAUAGuucuuucucaagccGCGaCCGGCgGGCGCg -3'
miRNA:   3'- -UCGCUGugUAUU--------------UGC-GGUCGgCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 50403 0.66 0.744063
Target:  5'- cGCGACAUguucgGUGAAC-CCuGCCgcaaGGCGCu -3'
miRNA:   3'- uCGCUGUG-----UAUUUGcGGuCGG----CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 49967 0.66 0.73344
Target:  5'- cGcCGACGCAUGcgaucuuUGCCcGCCGGCuCa -3'
miRNA:   3'- uC-GCUGUGUAUuu-----GCGGuCGGCCGuG- -5'
12326 5' -54.8 NC_003324.1 + 48833 0.66 0.744063
Target:  5'- gGGCGACGagGUGAuguccuucauCGCCAGCUcagagGGCAUu -3'
miRNA:   3'- -UCGCUGUg-UAUUu---------GCGGUCGG-----CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 48832 0.66 0.700997
Target:  5'- gAGCGcuuCGC-UGAugGCCugcagccuGCUGGCGCc -3'
miRNA:   3'- -UCGCu--GUGuAUUugCGGu-------CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 48755 0.68 0.623416
Target:  5'- aGGUGAUGCcgAGAUGCgCAGCCaGCGu -3'
miRNA:   3'- -UCGCUGUGuaUUUGCG-GUCGGcCGUg -5'
12326 5' -54.8 NC_003324.1 + 48725 0.69 0.535333
Target:  5'- gGGCGccaacCGCGUcgGCGCCAGCaGGCuGCa -3'
miRNA:   3'- -UCGCu----GUGUAuuUGCGGUCGgCCG-UG- -5'
12326 5' -54.8 NC_003324.1 + 48467 0.67 0.644587
Target:  5'- cAGCcgaGCAgGUAGGCGCCaagggcaacugcgAGCCGGCu- -3'
miRNA:   3'- -UCGc--UGUgUAUUUGCGG-------------UCGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 47469 0.67 0.6457
Target:  5'- uGGCGAUGCGUAGAUGguCCuGCaucaacugCGGCGCa -3'
miRNA:   3'- -UCGCUGUGUAUUUGC--GGuCG--------GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 45695 0.69 0.546158
Target:  5'- cGGCGAgGCGUGAGCaggGCaaucaGGCgaCGGCACg -3'
miRNA:   3'- -UCGCUgUGUAUUUG---CGg----UCG--GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 43897 0.7 0.482482
Target:  5'- cGGCGGCcaucCGUGAuuucacGCGCCuuGCCGGCGu -3'
miRNA:   3'- -UCGCUGu---GUAUU------UGCGGu-CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 43794 0.66 0.744063
Target:  5'- gGGUGcCGg--GAACGCCGGCaaGGCGCg -3'
miRNA:   3'- -UCGCuGUguaUUUGCGGUCGg-CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 42917 0.66 0.744063
Target:  5'- gGGCGAC-CAUuGGCgGUCAcugcGCCGGCGg -3'
miRNA:   3'- -UCGCUGuGUAuUUG-CGGU----CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 41856 0.66 0.690029
Target:  5'- --aGACAgCAUGAACGUCucGCCGGuCAUg -3'
miRNA:   3'- ucgCUGU-GUAUUUGCGGu-CGGCC-GUG- -5'
12326 5' -54.8 NC_003324.1 + 41461 0.69 0.513918
Target:  5'- aGGCGGCAUugguaaggGGACGCgUAGCCacgGGCGCu -3'
miRNA:   3'- -UCGCUGUGua------UUUGCG-GUCGG---CCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.