Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 48832 | 0.66 | 0.700997 |
Target: 5'- gAGCGcuuCGC-UGAugGCCugcagccuGCUGGCGCc -3' miRNA: 3'- -UCGCu--GUGuAUUugCGGu-------CGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 49967 | 0.66 | 0.73344 |
Target: 5'- cGcCGACGCAUGcgaucuuUGCCcGCCGGCuCa -3' miRNA: 3'- uC-GCUGUGUAUuu-----GCGGuCGGCCGuG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 54248 | 0.66 | 0.722714 |
Target: 5'- cGCGGCACcgGu-UGCCauGGaCCGGCAUc -3' miRNA: 3'- uCGCUGUGuaUuuGCGG--UC-GGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 24431 | 0.66 | 0.73344 |
Target: 5'- gGGCGAUGCGaacauuGCGCCGaCCuGCACg -3' miRNA: 3'- -UCGCUGUGUauu---UGCGGUcGGcCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 10708 | 0.66 | 0.690029 |
Target: 5'- uAGCGACACGgagccACgGCCAGCguugGGCGa -3' miRNA: 3'- -UCGCUGUGUauu--UG-CGGUCGg---CCGUg -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 35591 | 0.66 | 0.711896 |
Target: 5'- cGGUG-CGCAgaagucGGCGCuggaagCAGCCGGUACg -3' miRNA: 3'- -UCGCuGUGUau----UUGCG------GUCGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 41856 | 0.66 | 0.690029 |
Target: 5'- --aGACAgCAUGAACGUCucGCCGGuCAUg -3' miRNA: 3'- ucgCUGU-GUAUUUGCGGu-CGGCC-GUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 28820 | 0.66 | 0.690029 |
Target: 5'- cGCGcucauuGCGCuu-GACGCCAGCCuguucgaGCACg -3' miRNA: 3'- uCGC------UGUGuauUUGCGGUCGGc------CGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 14338 | 0.66 | 0.700997 |
Target: 5'- gAGCGAgGCAgcugcagAAGCGCgGGCCGacGUAUc -3' miRNA: 3'- -UCGCUgUGUa------UUUGCGgUCGGC--CGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 2695 | 0.66 | 0.690029 |
Target: 5'- cAGCGGCAaggGUGAGgcucUGCUAGCCGGauuuGCg -3' miRNA: 3'- -UCGCUGUg--UAUUU----GCGGUCGGCCg---UG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 43794 | 0.66 | 0.744063 |
Target: 5'- gGGUGcCGg--GAACGCCGGCaaGGCGCg -3' miRNA: 3'- -UCGCuGUguaUUUGCGGUCGg-CCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 23934 | 0.66 | 0.744063 |
Target: 5'- uGCucUACA-AGACGCCGGCCGGaaacUACg -3' miRNA: 3'- uCGcuGUGUaUUUGCGGUCGGCC----GUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 48833 | 0.66 | 0.744063 |
Target: 5'- gGGCGACGagGUGAuguccuucauCGCCAGCUcagagGGCAUu -3' miRNA: 3'- -UCGCUGUg-UAUUu---------GCGGUCGG-----CCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 50403 | 0.66 | 0.744063 |
Target: 5'- cGCGACAUguucgGUGAAC-CCuGCCgcaaGGCGCu -3' miRNA: 3'- uCGCUGUG-----UAUUUGcGGuCGG----CCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 29872 | 0.66 | 0.73344 |
Target: 5'- cGCGACuguGCGUGugGACGCCgagggauuggAGCCgauccuugGGCGCa -3' miRNA: 3'- uCGCUG---UGUAU--UUGCGG----------UCGG--------CCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 54375 | 0.66 | 0.740888 |
Target: 5'- cAGaCGGCGCA--GACGCaggccuuccagcaaCGGCuCGGCGCu -3' miRNA: 3'- -UC-GCUGUGUauUUGCG--------------GUCG-GCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 42917 | 0.66 | 0.744063 |
Target: 5'- gGGCGAC-CAUuGGCgGUCAcugcGCCGGCGg -3' miRNA: 3'- -UCGCUGuGUAuUUG-CGGU----CGGCCGUg -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 30307 | 0.66 | 0.744063 |
Target: 5'- uGGCGuCGCuc-GGCGCguGCUGGCu- -3' miRNA: 3'- -UCGCuGUGuauUUGCGguCGGCCGug -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 14529 | 0.66 | 0.744063 |
Target: 5'- cGcCGAUGCuUGGACGCCGGCaugGGCcCa -3' miRNA: 3'- uC-GCUGUGuAUUUGCGGUCGg--CCGuG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 9316 | 0.66 | 0.704274 |
Target: 5'- uGGCGGCACcaacaugAUGAACuacaacggcaaucuCCAGCuCGGCGCc -3' miRNA: 3'- -UCGCUGUG-------UAUUUGc-------------GGUCG-GCCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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