miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 382 0.68 0.570206
Target:  5'- cGCGGCGCGgcuaaccacCGCCaagccaugccuauugGGCUGGCGCa -3'
miRNA:   3'- uCGCUGUGUauuu-----GCGG---------------UCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 1543 0.67 0.666824
Target:  5'- cGCGGCGCuauggccccgAUGAagaaaggGCGCCAGCCcGCGa -3'
miRNA:   3'- uCGCUGUG----------UAUU-------UGCGGUCGGcCGUg -5'
12326 5' -54.8 NC_003324.1 + 1651 0.69 0.546158
Target:  5'- --aGAUugGUGAuCGCgGGCUGGCGCc -3'
miRNA:   3'- ucgCUGugUAUUuGCGgUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 2544 0.68 0.590072
Target:  5'- aGGCGACG----GACGgCAGaCGGCACg -3'
miRNA:   3'- -UCGCUGUguauUUGCgGUCgGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 2695 0.66 0.690029
Target:  5'- cAGCGGCAaggGUGAGgcucUGCUAGCCGGauuuGCg -3'
miRNA:   3'- -UCGCUGUg--UAUUU----GCGGUCGGCCg---UG- -5'
12326 5' -54.8 NC_003324.1 + 3631 0.71 0.413068
Target:  5'- gGGCGcCACcgAAGCGCCguuugcAGCCGGUuccGCu -3'
miRNA:   3'- -UCGCuGUGuaUUUGCGG------UCGGCCG---UG- -5'
12326 5' -54.8 NC_003324.1 + 4009 0.67 0.679004
Target:  5'- uGGCGAUGCA--AAgGCCcaaaagaaguGGuCCGGCGCg -3'
miRNA:   3'- -UCGCUGUGUauUUgCGG----------UC-GGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 4318 0.69 0.513918
Target:  5'- cGCG-CACAacauGCGCCAGaUCGGCAa -3'
miRNA:   3'- uCGCuGUGUauu-UGCGGUC-GGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 7068 0.69 0.546158
Target:  5'- aGGCcGCGCGUGAGuucUGCCAGCgcaccaacuguUGGCGCg -3'
miRNA:   3'- -UCGcUGUGUAUUU---GCGGUCG-----------GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 7292 0.7 0.482482
Target:  5'- aAGCGACAgugcgggguguCAaagGGACGCCaucgAGCuCGGCGCg -3'
miRNA:   3'- -UCGCUGU-----------GUa--UUUGCGG----UCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 7533 0.74 0.294376
Target:  5'- aGGCGAUACGgacgacgAAGgGCCAGCaaGGCGCa -3'
miRNA:   3'- -UCGCUGUGUa------UUUgCGGUCGg-CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 7745 1.09 0.000948
Target:  5'- cAGCGACACAUAAACGCCAGCCGGCACu -3'
miRNA:   3'- -UCGCUGUGUAUUUGCGGUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 8305 0.7 0.492861
Target:  5'- cAGCGucaucCGCAggguAACGCC-GUCGGCGCu -3'
miRNA:   3'- -UCGCu----GUGUau--UUGCGGuCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 9219 0.7 0.503341
Target:  5'- uGCGGCGCGguGAUGCU-GCCGGUAa -3'
miRNA:   3'- uCGCUGUGUauUUGCGGuCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 9316 0.66 0.704274
Target:  5'- uGGCGGCACcaacaugAUGAACuacaacggcaaucuCCAGCuCGGCGCc -3'
miRNA:   3'- -UCGCUGUG-------UAUUUGc-------------GGUCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 10198 0.69 0.534254
Target:  5'- uAGUG-CuCAUcgGCGCCAauaucauGCCGGCGCa -3'
miRNA:   3'- -UCGCuGuGUAuuUGCGGU-------CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 10708 0.66 0.690029
Target:  5'- uAGCGACACGgagccACgGCCAGCguugGGCGa -3'
miRNA:   3'- -UCGCUGUGUauu--UG-CGGUCGg---CCGUg -5'
12326 5' -54.8 NC_003324.1 + 12892 0.69 0.535333
Target:  5'- uGCGGCGCGUcgAAACGCUGgaugguuuugcuGCCaGGCGCc -3'
miRNA:   3'- uCGCUGUGUA--UUUGCGGU------------CGG-CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 13175 0.67 0.656829
Target:  5'- cAGCGAggcUGCGUcgGCGgCGGUCGGCGg -3'
miRNA:   3'- -UCGCU---GUGUAuuUGCgGUCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 13710 0.68 0.623416
Target:  5'- aAGUGuCGCGUcGGACGgCGGCaGGCACu -3'
miRNA:   3'- -UCGCuGUGUA-UUUGCgGUCGgCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.