Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12326 | 5' | -54.8 | NC_003324.1 | + | 7068 | 0.69 | 0.546158 |
Target: 5'- aGGCcGCGCGUGAGuucUGCCAGCgcaccaacuguUGGCGCg -3' miRNA: 3'- -UCGcUGUGUAUUU---GCGGUCG-----------GCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 38088 | 0.7 | 0.503341 |
Target: 5'- uGGCGaaGCGCGUcgGCGCCGuGCUGGUg- -3' miRNA: 3'- -UCGC--UGUGUAuuUGCGGU-CGGCCGug -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 4318 | 0.69 | 0.513918 |
Target: 5'- cGCG-CACAacauGCGCCAGaUCGGCAa -3' miRNA: 3'- uCGCuGUGUauu-UGCGGUC-GGCCGUg -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 41461 | 0.69 | 0.513918 |
Target: 5'- aGGCGGCAUugguaaggGGACGCgUAGCCacgGGCGCu -3' miRNA: 3'- -UCGCUGUGua------UUUGCG-GUCGG---CCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 10198 | 0.69 | 0.534254 |
Target: 5'- uAGUG-CuCAUcgGCGCCAauaucauGCCGGCGCa -3' miRNA: 3'- -UCGCuGuGUAuuUGCGGU-------CGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 18131 | 0.69 | 0.535333 |
Target: 5'- cAGCGGCGUGUAuucGACGCCGGuuucgccgacaCCGGCAa -3' miRNA: 3'- -UCGCUGUGUAU---UUGCGGUC-----------GGCCGUg -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 27060 | 0.69 | 0.535333 |
Target: 5'- cGCGACGCG---GCGUUaccguuguGGCCGGUGCg -3' miRNA: 3'- uCGCUGUGUauuUGCGG--------UCGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 48725 | 0.69 | 0.535333 |
Target: 5'- gGGCGccaacCGCGUcgGCGCCAGCaGGCuGCa -3' miRNA: 3'- -UCGCu----GUGUAuuUGCGGUCGgCCG-UG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 39762 | 0.69 | 0.535333 |
Target: 5'- cGGCGGCACGUGcucGAUGaucuCGGCaCGGUGCa -3' miRNA: 3'- -UCGCUGUGUAU---UUGCg---GUCG-GCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 31765 | 0.7 | 0.503341 |
Target: 5'- uGGgGGCGCc--AACGCCuGCCGGCc- -3' miRNA: 3'- -UCgCUGUGuauUUGCGGuCGGCCGug -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 29973 | 0.7 | 0.492861 |
Target: 5'- cGGCGGCagccggguccGCAUcGAUcCCGGCCGGUGCa -3' miRNA: 3'- -UCGCUG----------UGUAuUUGcGGUCGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 8305 | 0.7 | 0.492861 |
Target: 5'- cAGCGucaucCGCAggguAACGCC-GUCGGCGCu -3' miRNA: 3'- -UCGCu----GUGUau--UUGCGGuCGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 7533 | 0.74 | 0.294376 |
Target: 5'- aGGCGAUACGgacgacgAAGgGCCAGCaaGGCGCa -3' miRNA: 3'- -UCGCUGUGUa------UUUgCGGUCGg-CCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 21092 | 0.73 | 0.324565 |
Target: 5'- cGCGGCGCGUGcuGCGUCGGCUuccacgucgggcuGGCGCu -3' miRNA: 3'- uCGCUGUGUAUu-UGCGGUCGG-------------CCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 14797 | 0.72 | 0.385261 |
Target: 5'- cGCGGCGaa-GAACG-CGGCCGGCAUc -3' miRNA: 3'- uCGCUGUguaUUUGCgGUCGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 36755 | 0.72 | 0.394392 |
Target: 5'- uGCGAgGCccgugGAGCGCUGGCCGGUg- -3' miRNA: 3'- uCGCUgUGua---UUUGCGGUCGGCCGug -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 23150 | 0.71 | 0.403662 |
Target: 5'- uGGCGGCA----AACGUCuuGCCGGCGCc -3' miRNA: 3'- -UCGCUGUguauUUGCGGu-CGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 53661 | 0.71 | 0.446035 |
Target: 5'- uGCGGCACcuugGAGCGCCgAGCUugauacggcgaaacaGGCGCu -3' miRNA: 3'- uCGCUGUGua--UUUGCGG-UCGG---------------CCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 21963 | 0.7 | 0.452004 |
Target: 5'- cGGCGGCGCG---AUGCaccuuggAGCCGGCAUa -3' miRNA: 3'- -UCGCUGUGUauuUGCGg------UCGGCCGUG- -5' |
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12326 | 5' | -54.8 | NC_003324.1 | + | 14599 | 0.7 | 0.462049 |
Target: 5'- cGGCGGCGCAggcgguAGCGUggCGGCCGGaGCu -3' miRNA: 3'- -UCGCUGUGUau----UUGCG--GUCGGCCgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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