miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 41856 0.66 0.690029
Target:  5'- --aGACAgCAUGAACGUCucGCCGGuCAUg -3'
miRNA:   3'- ucgCUGU-GUAUUUGCGGu-CGGCC-GUG- -5'
12326 5' -54.8 NC_003324.1 + 48833 0.66 0.744063
Target:  5'- gGGCGACGagGUGAuguccuucauCGCCAGCUcagagGGCAUu -3'
miRNA:   3'- -UCGCUGUg-UAUUu---------GCGGUCGG-----CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 50403 0.66 0.744063
Target:  5'- cGCGACAUguucgGUGAAC-CCuGCCgcaaGGCGCu -3'
miRNA:   3'- uCGCUGUG-----UAUUUGcGGuCGG----CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 43794 0.66 0.744063
Target:  5'- gGGUGcCGg--GAACGCCGGCaaGGCGCg -3'
miRNA:   3'- -UCGCuGUguaUUUGCGGUCGg-CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 42917 0.66 0.744063
Target:  5'- gGGCGAC-CAUuGGCgGUCAcugcGCCGGCGg -3'
miRNA:   3'- -UCGCUGuGUAuUUG-CGGU----CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 24431 0.66 0.73344
Target:  5'- gGGCGAUGCGaacauuGCGCCGaCCuGCACg -3'
miRNA:   3'- -UCGCUGUGUauu---UGCGGUcGGcCGUG- -5'
12326 5' -54.8 NC_003324.1 + 54248 0.66 0.722714
Target:  5'- cGCGGCACcgGu-UGCCauGGaCCGGCAUc -3'
miRNA:   3'- uCGCUGUGuaUuuGCGG--UC-GGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 9316 0.66 0.704274
Target:  5'- uGGCGGCACcaacaugAUGAACuacaacggcaaucuCCAGCuCGGCGCc -3'
miRNA:   3'- -UCGCUGUG-------UAUUUGc-------------GGUCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 14338 0.66 0.700997
Target:  5'- gAGCGAgGCAgcugcagAAGCGCgGGCCGacGUAUc -3'
miRNA:   3'- -UCGCUgUGUa------UUUGCGgUCGGC--CGUG- -5'
12326 5' -54.8 NC_003324.1 + 28820 0.66 0.690029
Target:  5'- cGCGcucauuGCGCuu-GACGCCAGCCuguucgaGCACg -3'
miRNA:   3'- uCGC------UGUGuauUUGCGGUCGGc------CGUG- -5'
12326 5' -54.8 NC_003324.1 + 7533 0.74 0.294376
Target:  5'- aGGCGAUACGgacgacgAAGgGCCAGCaaGGCGCa -3'
miRNA:   3'- -UCGCUGUGUa------UUUgCGGUCGg-CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 4009 0.67 0.679004
Target:  5'- uGGCGAUGCA--AAgGCCcaaaagaaguGGuCCGGCGCg -3'
miRNA:   3'- -UCGCUGUGUauUUgCGG----------UC-GGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 26719 0.67 0.667933
Target:  5'- uGCGACGCAgcaGGGCGCgGGCCuuuucuGCAg -3'
miRNA:   3'- uCGCUGUGUa--UUUGCGgUCGGc-----CGUg -5'
12326 5' -54.8 NC_003324.1 + 1543 0.67 0.666824
Target:  5'- cGCGGCGCuauggccccgAUGAagaaaggGCGCCAGCCcGCGa -3'
miRNA:   3'- uCGCUGUG----------UAUU-------UGCGGUCGGcCGUg -5'
12326 5' -54.8 NC_003324.1 + 23547 0.67 0.656829
Target:  5'- cAGCGugGCGgcgggcGCGCuCGGCgaCGGUACa -3'
miRNA:   3'- -UCGCugUGUauu---UGCG-GUCG--GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 47469 0.67 0.6457
Target:  5'- uGGCGAUGCGUAGAUGguCCuGCaucaacugCGGCGCa -3'
miRNA:   3'- -UCGCUGUGUAUUUGC--GGuCG--------GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 26017 0.67 0.633445
Target:  5'- gGGUGACugAgcgcgccaauGGCGUCAccggucuGCCGGCGCu -3'
miRNA:   3'- -UCGCUGugUau--------UUGCGGU-------CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 13710 0.68 0.623416
Target:  5'- aAGUGuCGCGUcGGACGgCGGCaGGCACu -3'
miRNA:   3'- -UCGCuGUGUA-UUUGCgGUCGgCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 24310 0.68 0.61228
Target:  5'- aGGCGuCGCGgacGCGCaccauGCCGGCAa -3'
miRNA:   3'- -UCGCuGUGUauuUGCGgu---CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 19375 0.68 0.590072
Target:  5'- cAGCGAUGgAUcGACGCCGGCgCGcGuCGCg -3'
miRNA:   3'- -UCGCUGUgUAuUUGCGGUCG-GC-C-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.