miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 7745 1.09 0.000948
Target:  5'- cAGCGACACAUAAACGCCAGCCGGCACu -3'
miRNA:   3'- -UCGCUGUGUAUUUGCGGUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 20198 0.76 0.227055
Target:  5'- aGGCG-CGCGUAAcGCGCCcgguauGGCCGGCAg -3'
miRNA:   3'- -UCGCuGUGUAUU-UGCGG------UCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 56803 0.74 0.282639
Target:  5'- uGCGGCGCAacgaacUGAACGCugcaagcgcgucauaCAGCCGGCGa -3'
miRNA:   3'- uCGCUGUGU------AUUUGCG---------------GUCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 31311 0.74 0.286996
Target:  5'- cGGCGGCGCu--GGCGCUGGCgGGgGCa -3'
miRNA:   3'- -UCGCUGUGuauUUGCGGUCGgCCgUG- -5'
12326 5' -54.8 NC_003324.1 + 19601 0.74 0.286996
Target:  5'- aAGCGGCugAUGGACGCCuucCgCGGCAa -3'
miRNA:   3'- -UCGCUGugUAUUUGCGGuc-G-GCCGUg -5'
12326 5' -54.8 NC_003324.1 + 7533 0.74 0.294376
Target:  5'- aGGCGAUACGgacgacgAAGgGCCAGCaaGGCGCa -3'
miRNA:   3'- -UCGCUGUGUa------UUUgCGGUCGg-CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 21092 0.73 0.324565
Target:  5'- cGCGGCGCGUGcuGCGUCGGCUuccacgucgggcuGGCGCu -3'
miRNA:   3'- uCGCUGUGUAUu-UGCGGUCGG-------------CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 20609 0.72 0.37538
Target:  5'- cGGCG-CugAUGGGCGCUugcggucGGCgGGCACg -3'
miRNA:   3'- -UCGCuGugUAUUUGCGG-------UCGgCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 14797 0.72 0.385261
Target:  5'- cGCGGCGaa-GAACG-CGGCCGGCAUc -3'
miRNA:   3'- uCGCUGUguaUUUGCgGUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 36755 0.72 0.394392
Target:  5'- uGCGAgGCccgugGAGCGCUGGCCGGUg- -3'
miRNA:   3'- uCGCUgUGua---UUUGCGGUCGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 25312 0.71 0.403662
Target:  5'- gGGCGGC-CAggugcucGAAcCGUCAGUCGGCGCa -3'
miRNA:   3'- -UCGCUGuGUa------UUU-GCGGUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 23150 0.71 0.403662
Target:  5'- uGGCGGCA----AACGUCuuGCCGGCGCc -3'
miRNA:   3'- -UCGCUGUguauUUGCGGu-CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 37241 0.71 0.403662
Target:  5'- cGCGGCGCAaggaAGACGacaAGCCGGCGg -3'
miRNA:   3'- uCGCUGUGUa---UUUGCgg-UCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 3631 0.71 0.413068
Target:  5'- gGGCGcCACcgAAGCGCCguuugcAGCCGGUuccGCu -3'
miRNA:   3'- -UCGCuGUGuaUUUGCGG------UCGGCCG---UG- -5'
12326 5' -54.8 NC_003324.1 + 29032 0.71 0.44208
Target:  5'- gAGCGcuuGCuCAagcAGCGCCAGgCGGCACg -3'
miRNA:   3'- -UCGC---UGuGUau-UUGCGGUCgGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 24007 0.71 0.44208
Target:  5'- cGCGugAaccucGACGCCAuGUCGGCGCu -3'
miRNA:   3'- uCGCugUguau-UUGCGGU-CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 53661 0.71 0.446035
Target:  5'- uGCGGCACcuugGAGCGCCgAGCUugauacggcgaaacaGGCGCu -3'
miRNA:   3'- uCGCUGUGua--UUUGCGG-UCGG---------------CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 21963 0.7 0.452004
Target:  5'- cGGCGGCGCG---AUGCaccuuggAGCCGGCAUa -3'
miRNA:   3'- -UCGCUGUGUauuUGCGg------UCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 40496 0.7 0.461039
Target:  5'- aGGCGACGacgAAGCGCCAgacgaaggcgaagGCCGGUg- -3'
miRNA:   3'- -UCGCUGUguaUUUGCGGU-------------CGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 14599 0.7 0.462049
Target:  5'- cGGCGGCGCAggcgguAGCGUggCGGCCGGaGCu -3'
miRNA:   3'- -UCGCUGUGUau----UUGCG--GUCGGCCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.