miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 14529 0.66 0.744063
Target:  5'- cGcCGAUGCuUGGACGCCGGCaugGGCcCa -3'
miRNA:   3'- uC-GCUGUGuAUUUGCGGUCGg--CCGuG- -5'
12326 5' -54.8 NC_003324.1 + 32121 0.68 0.61228
Target:  5'- -uCGGC-CGUGAGcCGCC-GCCGGCAg -3'
miRNA:   3'- ucGCUGuGUAUUU-GCGGuCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 19097 0.68 0.601163
Target:  5'- uGCGcauCGCGUucGAgGCCAGCCGcGUGCa -3'
miRNA:   3'- uCGCu--GUGUAu-UUgCGGUCGGC-CGUG- -5'
12326 5' -54.8 NC_003324.1 + 7745 1.09 0.000948
Target:  5'- cAGCGACACAUAAACGCCAGCCGGCACu -3'
miRNA:   3'- -UCGCUGUGUAUUUGCGGUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 29872 0.66 0.73344
Target:  5'- cGCGACuguGCGUGugGACGCCgagggauuggAGCCgauccuugGGCGCa -3'
miRNA:   3'- uCGCUG---UGUAU--UUGCGG----------UCGG--------CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 49967 0.66 0.73344
Target:  5'- cGcCGACGCAUGcgaucuuUGCCcGCCGGCuCa -3'
miRNA:   3'- uC-GCUGUGUAUuu-----GCGGuCGGCCGuG- -5'
12326 5' -54.8 NC_003324.1 + 48832 0.66 0.700997
Target:  5'- gAGCGcuuCGC-UGAugGCCugcagccuGCUGGCGCc -3'
miRNA:   3'- -UCGCu--GUGuAUUugCGGu-------CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 10708 0.66 0.690029
Target:  5'- uAGCGACACGgagccACgGCCAGCguugGGCGa -3'
miRNA:   3'- -UCGCUGUGUauu--UG-CGGUCGg---CCGUg -5'
12326 5' -54.8 NC_003324.1 + 29714 0.67 0.6457
Target:  5'- aGGCGGCgGCGUu-GCGCCAGaagcaGGCAg -3'
miRNA:   3'- -UCGCUG-UGUAuuUGCGGUCgg---CCGUg -5'
12326 5' -54.8 NC_003324.1 + 48755 0.68 0.623416
Target:  5'- aGGUGAUGCcgAGAUGCgCAGCCaGCGu -3'
miRNA:   3'- -UCGCUGUGuaUUUGCG-GUCGGcCGUg -5'
12326 5' -54.8 NC_003324.1 + 48467 0.67 0.644587
Target:  5'- cAGCcgaGCAgGUAGGCGCCaagggcaacugcgAGCCGGCu- -3'
miRNA:   3'- -UCGc--UGUgUAUUUGCGG-------------UCGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 13175 0.67 0.656829
Target:  5'- cAGCGAggcUGCGUcgGCGgCGGUCGGCGg -3'
miRNA:   3'- -UCGCU---GUGUAuuUGCgGUCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 30307 0.66 0.744063
Target:  5'- uGGCGuCGCuc-GGCGCguGCUGGCu- -3'
miRNA:   3'- -UCGCuGUGuauUUGCGguCGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 31699 0.67 0.634559
Target:  5'- cGCGAgugggUGCAUGccAACGCCAGCCGuuAUg -3'
miRNA:   3'- uCGCU-----GUGUAU--UUGCGGUCGGCcgUG- -5'
12326 5' -54.8 NC_003324.1 + 23934 0.66 0.744063
Target:  5'- uGCucUACA-AGACGCCGGCCGGaaacUACg -3'
miRNA:   3'- uCGcuGUGUaUUUGCGGUCGGCC----GUG- -5'
12326 5' -54.8 NC_003324.1 + 2695 0.66 0.690029
Target:  5'- cAGCGGCAaggGUGAGgcucUGCUAGCCGGauuuGCg -3'
miRNA:   3'- -UCGCUGUg--UAUUU----GCGGUCGGCCg---UG- -5'
12326 5' -54.8 NC_003324.1 + 53384 0.67 0.631216
Target:  5'- cGGCGACcgAUAGuucuuucucaagccGCGaCCGGCgGGCGCg -3'
miRNA:   3'- -UCGCUGugUAUU--------------UGC-GGUCGgCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 25711 0.68 0.61228
Target:  5'- uGCGugAUGUccaaucAGCaGCCGuGCCGGCGCa -3'
miRNA:   3'- uCGCugUGUAu-----UUG-CGGU-CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 54375 0.66 0.740888
Target:  5'- cAGaCGGCGCA--GACGCaggccuuccagcaaCGGCuCGGCGCu -3'
miRNA:   3'- -UC-GCUGUGUauUUGCG--------------GUCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 35591 0.66 0.711896
Target:  5'- cGGUG-CGCAgaagucGGCGCuggaagCAGCCGGUACg -3'
miRNA:   3'- -UCGCuGUGUau----UUGCG------GUCGGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.