miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 28820 0.66 0.690029
Target:  5'- cGCGcucauuGCGCuu-GACGCCAGCCuguucgaGCACg -3'
miRNA:   3'- uCGC------UGUGuauUUGCGGUCGGc------CGUG- -5'
12326 5' -54.8 NC_003324.1 + 27644 0.69 0.557053
Target:  5'- cGCGAaa-AUAuGCGUgAGCCGGCAg -3'
miRNA:   3'- uCGCUgugUAUuUGCGgUCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 27060 0.69 0.535333
Target:  5'- cGCGACGCG---GCGUUaccguuguGGCCGGUGCg -3'
miRNA:   3'- uCGCUGUGUauuUGCGG--------UCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 26894 0.7 0.492861
Target:  5'- gAGCGGCGCcaaa--GCCAGCCaagcGCACg -3'
miRNA:   3'- -UCGCUGUGuauuugCGGUCGGc---CGUG- -5'
12326 5' -54.8 NC_003324.1 + 26719 0.67 0.667933
Target:  5'- uGCGACGCAgcaGGGCGCgGGCCuuuucuGCAg -3'
miRNA:   3'- uCGCUGUGUa--UUUGCGgUCGGc-----CGUg -5'
12326 5' -54.8 NC_003324.1 + 26017 0.67 0.633445
Target:  5'- gGGUGACugAgcgcgccaauGGCGUCAccggucuGCCGGCGCu -3'
miRNA:   3'- -UCGCUGugUau--------UUGCGGU-------CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 25711 0.68 0.61228
Target:  5'- uGCGugAUGUccaaucAGCaGCCGuGCCGGCGCa -3'
miRNA:   3'- uCGCugUGUAu-----UUG-CGGU-CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 25312 0.71 0.403662
Target:  5'- gGGCGGC-CAggugcucGAAcCGUCAGUCGGCGCa -3'
miRNA:   3'- -UCGCUGuGUa------UUU-GCGGUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 25174 0.7 0.492861
Target:  5'- cGGCGccaACAUccAGACGCCAGUCGGguUu -3'
miRNA:   3'- -UCGCug-UGUA--UUUGCGGUCGGCCguG- -5'
12326 5' -54.8 NC_003324.1 + 24808 0.7 0.482482
Target:  5'- gGGCGACAagccugacacguCAUGGACGaaGGUCGGCGa -3'
miRNA:   3'- -UCGCUGU------------GUAUUUGCggUCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 24431 0.66 0.73344
Target:  5'- gGGCGAUGCGaacauuGCGCCGaCCuGCACg -3'
miRNA:   3'- -UCGCUGUGUauu---UGCGGUcGGcCGUG- -5'
12326 5' -54.8 NC_003324.1 + 24310 0.68 0.61228
Target:  5'- aGGCGuCGCGgacGCGCaccauGCCGGCAa -3'
miRNA:   3'- -UCGCuGUGUauuUGCGgu---CGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 24007 0.71 0.44208
Target:  5'- cGCGugAaccucGACGCCAuGUCGGCGCu -3'
miRNA:   3'- uCGCugUguau-UUGCGGU-CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 23934 0.66 0.744063
Target:  5'- uGCucUACA-AGACGCCGGCCGGaaacUACg -3'
miRNA:   3'- uCGcuGUGUaUUUGCGGUCGGCC----GUG- -5'
12326 5' -54.8 NC_003324.1 + 23547 0.67 0.656829
Target:  5'- cAGCGugGCGgcgggcGCGCuCGGCgaCGGUACa -3'
miRNA:   3'- -UCGCugUGUauu---UGCG-GUCG--GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 23150 0.71 0.403662
Target:  5'- uGGCGGCA----AACGUCuuGCCGGCGCc -3'
miRNA:   3'- -UCGCUGUguauUUGCGGu-CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 21963 0.7 0.452004
Target:  5'- cGGCGGCGCG---AUGCaccuuggAGCCGGCAUa -3'
miRNA:   3'- -UCGCUGUGUauuUGCGg------UCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 21092 0.73 0.324565
Target:  5'- cGCGGCGCGUGcuGCGUCGGCUuccacgucgggcuGGCGCu -3'
miRNA:   3'- uCGCUGUGUAUu-UGCGGUCGG-------------CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 20609 0.72 0.37538
Target:  5'- cGGCG-CugAUGGGCGCUugcggucGGCgGGCACg -3'
miRNA:   3'- -UCGCuGugUAUUUGCGG-------UCGgCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 20198 0.76 0.227055
Target:  5'- aGGCG-CGCGUAAcGCGCCcgguauGGCCGGCAg -3'
miRNA:   3'- -UCGCuGUGUAUU-UGCGG------UCGGCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.