miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 15547 0.68 0.590072
Target:  5'- cGGCGACAUGgaAAGCGCCGaCCGGguUc -3'
miRNA:   3'- -UCGCUGUGUa-UUUGCGGUcGGCCguG- -5'
12326 5' -54.8 NC_003324.1 + 14553 0.68 0.588965
Target:  5'- aGGcCGACguggucaACAUGGgucGCgGCCuGCCGGCGCa -3'
miRNA:   3'- -UC-GCUG-------UGUAUU---UG-CGGuCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 37415 0.68 0.588965
Target:  5'- aGGCG-CACGUucuuguugcuaucGAGCGCauuGCCGcGCACa -3'
miRNA:   3'- -UCGCuGUGUA-------------UUUGCGgu-CGGC-CGUG- -5'
12326 5' -54.8 NC_003324.1 + 29095 0.68 0.579018
Target:  5'- cAGCcaGACGCuu--GCGCuCuGCCGGCAUa -3'
miRNA:   3'- -UCG--CUGUGuauuUGCG-GuCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 382 0.68 0.570206
Target:  5'- cGCGGCGCGgcuaaccacCGCCaagccaugccuauugGGCUGGCGCa -3'
miRNA:   3'- uCGCUGUGUauuu-----GCGG---------------UCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 17693 0.68 0.568009
Target:  5'- cGGCGGCAuCGUGcucAACGgCGcGCCGGgGCa -3'
miRNA:   3'- -UCGCUGU-GUAU---UUGCgGU-CGGCCgUG- -5'
12326 5' -54.8 NC_003324.1 + 27644 0.69 0.557053
Target:  5'- cGCGAaa-AUAuGCGUgAGCCGGCAg -3'
miRNA:   3'- uCGCUgugUAUuUGCGgUCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 7068 0.69 0.546158
Target:  5'- aGGCcGCGCGUGAGuucUGCCAGCgcaccaacuguUGGCGCg -3'
miRNA:   3'- -UCGcUGUGUAUUU---GCGGUCG-----------GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 45695 0.69 0.546158
Target:  5'- cGGCGAgGCGUGAGCaggGCaaucaGGCgaCGGCACg -3'
miRNA:   3'- -UCGCUgUGUAUUUG---CGg----UCG--GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 1651 0.69 0.546158
Target:  5'- --aGAUugGUGAuCGCgGGCUGGCGCc -3'
miRNA:   3'- ucgCUGugUAUUuGCGgUCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 16639 0.69 0.539654
Target:  5'- cGGCGAgACgAUGAGCaGCCAgccccucacccucucGCCGaGCACg -3'
miRNA:   3'- -UCGCUgUG-UAUUUG-CGGU---------------CGGC-CGUG- -5'
12326 5' -54.8 NC_003324.1 + 12892 0.69 0.535333
Target:  5'- uGCGGCGCGUcgAAACGCUGgaugguuuugcuGCCaGGCGCc -3'
miRNA:   3'- uCGCUGUGUA--UUUGCGGU------------CGG-CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 18131 0.69 0.535333
Target:  5'- cAGCGGCGUGUAuucGACGCCGGuuucgccgacaCCGGCAa -3'
miRNA:   3'- -UCGCUGUGUAU---UUGCGGUC-----------GGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 27060 0.69 0.535333
Target:  5'- cGCGACGCG---GCGUUaccguuguGGCCGGUGCg -3'
miRNA:   3'- uCGCUGUGUauuUGCGG--------UCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 48725 0.69 0.535333
Target:  5'- gGGCGccaacCGCGUcgGCGCCAGCaGGCuGCa -3'
miRNA:   3'- -UCGCu----GUGUAuuUGCGGUCGgCCG-UG- -5'
12326 5' -54.8 NC_003324.1 + 39762 0.69 0.535333
Target:  5'- cGGCGGCACGUGcucGAUGaucuCGGCaCGGUGCa -3'
miRNA:   3'- -UCGCUGUGUAU---UUGCg---GUCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 10198 0.69 0.534254
Target:  5'- uAGUG-CuCAUcgGCGCCAauaucauGCCGGCGCa -3'
miRNA:   3'- -UCGCuGuGUAuuUGCGGU-------CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 4318 0.69 0.513918
Target:  5'- cGCG-CACAacauGCGCCAGaUCGGCAa -3'
miRNA:   3'- uCGCuGUGUauu-UGCGGUC-GGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 41461 0.69 0.513918
Target:  5'- aGGCGGCAUugguaaggGGACGCgUAGCCacgGGCGCu -3'
miRNA:   3'- -UCGCUGUGua------UUUGCG-GUCGG---CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 17900 0.69 0.509676
Target:  5'- gGGCGACACcccgaaugcgcgccGUGAggcACGCUAccagaucGCCGGCAUc -3'
miRNA:   3'- -UCGCUGUG--------------UAUU---UGCGGU-------CGGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.