miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12326 5' -54.8 NC_003324.1 + 53384 0.67 0.631216
Target:  5'- cGGCGACcgAUAGuucuuucucaagccGCGaCCGGCgGGCGCg -3'
miRNA:   3'- -UCGCUGugUAUU--------------UGC-GGUCGgCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 48755 0.68 0.623416
Target:  5'- aGGUGAUGCcgAGAUGCgCAGCCaGCGu -3'
miRNA:   3'- -UCGCUGUGuaUUUGCG-GUCGGcCGUg -5'
12326 5' -54.8 NC_003324.1 + 7292 0.7 0.482482
Target:  5'- aAGCGACAgugcgggguguCAaagGGACGCCaucgAGCuCGGCGCg -3'
miRNA:   3'- -UCGCUGU-----------GUa--UUUGCGG----UCG-GCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 26894 0.7 0.492861
Target:  5'- gAGCGGCGCcaaa--GCCAGCCaagcGCACg -3'
miRNA:   3'- -UCGCUGUGuauuugCGGUCGGc---CGUG- -5'
12326 5' -54.8 NC_003324.1 + 31311 0.74 0.286996
Target:  5'- cGGCGGCGCu--GGCGCUGGCgGGgGCa -3'
miRNA:   3'- -UCGCUGUGuauUUGCGGUCGgCCgUG- -5'
12326 5' -54.8 NC_003324.1 + 37241 0.71 0.403662
Target:  5'- cGCGGCGCAaggaAGACGacaAGCCGGCGg -3'
miRNA:   3'- uCGCUGUGUa---UUUGCgg-UCGGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 23150 0.71 0.403662
Target:  5'- uGGCGGCA----AACGUCuuGCCGGCGCc -3'
miRNA:   3'- -UCGCUGUguauUUGCGGu-CGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 13710 0.68 0.623416
Target:  5'- aAGUGuCGCGUcGGACGgCGGCaGGCACu -3'
miRNA:   3'- -UCGCuGUGUA-UUUGCgGUCGgCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 21092 0.73 0.324565
Target:  5'- cGCGGCGCGUGcuGCGUCGGCUuccacgucgggcuGGCGCu -3'
miRNA:   3'- uCGCUGUGUAUu-UGCGGUCGG-------------CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 53661 0.71 0.446035
Target:  5'- uGCGGCACcuugGAGCGCCgAGCUugauacggcgaaacaGGCGCu -3'
miRNA:   3'- uCGCUGUGua--UUUGCGG-UCGG---------------CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 31765 0.7 0.503341
Target:  5'- uGGgGGCGCc--AACGCCuGCCGGCc- -3'
miRNA:   3'- -UCgCUGUGuauUUGCGGuCGGCCGug -5'
12326 5' -54.8 NC_003324.1 + 19375 0.68 0.590072
Target:  5'- cAGCGAUGgAUcGACGCCGGCgCGcGuCGCg -3'
miRNA:   3'- -UCGCUGUgUAuUUGCGGUCG-GC-C-GUG- -5'
12326 5' -54.8 NC_003324.1 + 15547 0.68 0.590072
Target:  5'- cGGCGACAUGgaAAGCGCCGaCCGGguUc -3'
miRNA:   3'- -UCGCUGUGUa-UUUGCGGUcGGCCguG- -5'
12326 5' -54.8 NC_003324.1 + 2544 0.68 0.590072
Target:  5'- aGGCGACG----GACGgCAGaCGGCACg -3'
miRNA:   3'- -UCGCUGUguauUUGCgGUCgGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 37415 0.68 0.588965
Target:  5'- aGGCG-CACGUucuuguugcuaucGAGCGCauuGCCGcGCACa -3'
miRNA:   3'- -UCGCuGUGUA-------------UUUGCGgu-CGGC-CGUG- -5'
12326 5' -54.8 NC_003324.1 + 14553 0.68 0.588965
Target:  5'- aGGcCGACguggucaACAUGGgucGCgGCCuGCCGGCGCa -3'
miRNA:   3'- -UC-GCUG-------UGUAUU---UG-CGGuCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 29095 0.68 0.579018
Target:  5'- cAGCcaGACGCuu--GCGCuCuGCCGGCAUa -3'
miRNA:   3'- -UCG--CUGUGuauuUGCG-GuCGGCCGUG- -5'
12326 5' -54.8 NC_003324.1 + 41461 0.69 0.513918
Target:  5'- aGGCGGCAUugguaaggGGACGCgUAGCCacgGGCGCu -3'
miRNA:   3'- -UCGCUGUGua------UUUGCG-GUCGG---CCGUG- -5'
12326 5' -54.8 NC_003324.1 + 4318 0.69 0.513918
Target:  5'- cGCG-CACAacauGCGCCAGaUCGGCAa -3'
miRNA:   3'- uCGCuGUGUauu-UGCGGUC-GGCCGUg -5'
12326 5' -54.8 NC_003324.1 + 38088 0.7 0.503341
Target:  5'- uGGCGaaGCGCGUcgGCGCCGuGCUGGUg- -3'
miRNA:   3'- -UCGC--UGUGUAuuUGCGGU-CGGCCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.