Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12331 | 3' | -59.4 | NC_003324.1 | + | 1607 | 0.67 | 0.436953 |
Target: 5'- aG-CGCCgCGcaccACUGCCGCCggauccucgcuGGCCCGg -3' miRNA: 3'- gCaGCGGaGCu---UGACGGUGG-----------UCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 2570 | 0.66 | 0.509058 |
Target: 5'- uGUCGCCgcUCGGAgUGCCACUguuucaaugggcgcuAGgCCa -3' miRNA: 3'- gCAGCGG--AGCUUgACGGUGG---------------UCgGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 2790 | 0.68 | 0.418485 |
Target: 5'- -aUCGCUUgGAGaCUGCCGCCGccgacaucguGCCCu -3' miRNA: 3'- gcAGCGGAgCUU-GACGGUGGU----------CGGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 5569 | 0.69 | 0.366044 |
Target: 5'- -uUCGCCgCGGGC-GUCAUCGGCCUGa -3' miRNA: 3'- gcAGCGGaGCUUGaCGGUGGUCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 11237 | 0.69 | 0.357756 |
Target: 5'- --aCGCUgugCGAGCcgGCCGCCAGaCCGg -3' miRNA: 3'- gcaGCGGa--GCUUGa-CGGUGGUCgGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 12604 | 1.08 | 0.000525 |
Target: 5'- cCGUCGCCUCGAACUGCCACCAGCCCGu -3' miRNA: 3'- -GCAGCGGAGCUUGACGGUGGUCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 14618 | 0.66 | 0.535584 |
Target: 5'- aCGUCgGCCUUGAGC-GCCAgC-GCCUu -3' miRNA: 3'- -GCAG-CGGAGCUUGaCGGUgGuCGGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 15664 | 0.69 | 0.374464 |
Target: 5'- --cCGCCUUGGcauCUGCCGugUCGGCCCa -3' miRNA: 3'- gcaGCGGAGCUu--GACGGU--GGUCGGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 17609 | 0.7 | 0.318313 |
Target: 5'- cCGgcgCGCCgUUGAGCacgaUGCCGCCgAGCUCGg -3' miRNA: 3'- -GCa--GCGG-AGCUUG----ACGGUGG-UCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 19735 | 0.66 | 0.529417 |
Target: 5'- aGUCGCggauccuugaggaucUUCGcggcaaacuGACUGaCCugCAGCCCGc -3' miRNA: 3'- gCAGCG---------------GAGC---------UUGAC-GGugGUCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 21210 | 0.67 | 0.436953 |
Target: 5'- aCGagGCCgagauGCUGCgcaagCGCCAGCCCGa -3' miRNA: 3'- -GCagCGGagcu-UGACG-----GUGGUCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 23632 | 0.66 | 0.535584 |
Target: 5'- cCGUCGCCgagCGcGCccGCCGCCAcGCUg- -3' miRNA: 3'- -GCAGCGGa--GCuUGa-CGGUGGU-CGGgc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 23708 | 0.68 | 0.42766 |
Target: 5'- uGUCgacuGCCUCGAugU-CCGCCGGCUg- -3' miRNA: 3'- gCAG----CGGAGCUugAcGGUGGUCGGgc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 26844 | 0.68 | 0.409431 |
Target: 5'- aGU-GCCUCGucGAUcGCCGCCAuGCCCu -3' miRNA: 3'- gCAgCGGAGC--UUGaCGGUGGU-CGGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 29645 | 0.66 | 0.535584 |
Target: 5'- aCGagGCCUUGAg--GCCGCUugAGCCCc -3' miRNA: 3'- -GCagCGGAGCUugaCGGUGG--UCGGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 30288 | 0.66 | 0.535584 |
Target: 5'- gGUCGCCcaagccgcCGAACaUGCCugUAGCgacgCCGg -3' miRNA: 3'- gCAGCGGa-------GCUUG-ACGGugGUCG----GGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 31157 | 0.68 | 0.409431 |
Target: 5'- --cUGCCUCgcgGAGCUGCCcgGCCugcgccaucaGGCCCGg -3' miRNA: 3'- gcaGCGGAG---CUUGACGG--UGG----------UCGGGC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 31751 | 0.67 | 0.485076 |
Target: 5'- cCGaUGCCUUGAACUgggggcgccaacGCCuGCCGGCCUc -3' miRNA: 3'- -GCaGCGGAGCUUGA------------CGG-UGGUCGGGc -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 32137 | 0.71 | 0.275414 |
Target: 5'- --cCGCCUCGGGCcggGCCGCCccgGGCuuGg -3' miRNA: 3'- gcaGCGGAGCUUGa--CGGUGG---UCGggC- -5' |
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12331 | 3' | -59.4 | NC_003324.1 | + | 32560 | 0.74 | 0.156784 |
Target: 5'- cCGUUGCgCUCG---UGCCAuCCAGCCCGa -3' miRNA: 3'- -GCAGCG-GAGCuugACGGU-GGUCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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