Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 54297 | 0.69 | 0.477008 |
Target: 5'- --aGGCCUgCGUCugC-GCC-GUCUGCa -3' miRNA: 3'- gaaCCGGA-GUAGugGuCGGuCAGGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 54173 | 0.67 | 0.588829 |
Target: 5'- -aUGcGCUUCGUCACaaacuggaugucgAGCCGGUCgGCc -3' miRNA: 3'- gaAC-CGGAGUAGUGg------------UCGGUCAGgCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 52237 | 0.69 | 0.447221 |
Target: 5'- --gGGCU--AUCACuCGGCCAGUUCGUc -3' miRNA: 3'- gaaCCGGagUAGUG-GUCGGUCAGGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 45940 | 0.66 | 0.625976 |
Target: 5'- --cGGCCUCG-CAUCAGgCGccCCGCg -3' miRNA: 3'- gaaCCGGAGUaGUGGUCgGUcaGGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 43909 | 0.66 | 0.625976 |
Target: 5'- gUUGaGCCUUuggCGCCGGCaccgAGcCCGCa -3' miRNA: 3'- gAAC-CGGAGua-GUGGUCGg---UCaGGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 43548 | 0.69 | 0.457037 |
Target: 5'- --aGGCUUCcagCAUCAGCCAcacgCCGCg -3' miRNA: 3'- gaaCCGGAGua-GUGGUCGGUca--GGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 43096 | 0.7 | 0.406403 |
Target: 5'- --aGGCCcCAcUACCGGCCGGUucuccguugccgacCCGCg -3' miRNA: 3'- gaaCCGGaGUaGUGGUCGGUCA--------------GGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 43034 | 0.73 | 0.26501 |
Target: 5'- --gGGCCUgCAUUGCCGGUaaCGGUUCGCg -3' miRNA: 3'- gaaCCGGA-GUAGUGGUCG--GUCAGGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 42867 | 0.66 | 0.658814 |
Target: 5'- --aGGCU-----GCCGGCCGGcCCGCg -3' miRNA: 3'- gaaCCGGaguagUGGUCGGUCaGGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 42117 | 0.66 | 0.647879 |
Target: 5'- gCUUcGCaCUCGUCGCCAauGCCg--CCGCg -3' miRNA: 3'- -GAAcCG-GAGUAGUGGU--CGGucaGGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 33346 | 0.66 | 0.647879 |
Target: 5'- -aUGGUCaUCGUC-CCGgugcgugguuGCCGGcUCCGCg -3' miRNA: 3'- gaACCGG-AGUAGuGGU----------CGGUC-AGGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 32367 | 0.68 | 0.518176 |
Target: 5'- --aGGCCgUUGUCGCCAGCguGUUCu- -3' miRNA: 3'- gaaCCGG-AGUAGUGGUCGguCAGGcg -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 32128 | 0.71 | 0.373211 |
Target: 5'- cCUUGGUCUC--CGCCucgGGCCGGgCCGCc -3' miRNA: 3'- -GAACCGGAGuaGUGG---UCGGUCaGGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 32086 | 0.66 | 0.67408 |
Target: 5'- --cGGCCUCgcugcgccucggcucGUCGCCGGUgAGgCCGa -3' miRNA: 3'- gaaCCGGAG---------------UAGUGGUCGgUCaGGCg -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 31779 | 0.66 | 0.669725 |
Target: 5'- -gUGGUUcgCGUCACCAGCaCGGggaUGCg -3' miRNA: 3'- gaACCGGa-GUAGUGGUCG-GUCag-GCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 31251 | 0.67 | 0.615028 |
Target: 5'- --gGGCCUgAUgGCgcaGGCCGGgcagcUCCGCg -3' miRNA: 3'- gaaCCGGAgUAgUGg--UCGGUC-----AGGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 31076 | 0.68 | 0.518176 |
Target: 5'- --cGGCCUgAUUGuCCGuGCCGGUCCuuGCg -3' miRNA: 3'- gaaCCGGAgUAGU-GGU-CGGUCAGG--CG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 30341 | 0.7 | 0.437523 |
Target: 5'- cCUUGGCCcgCAUCAUC-GCCGaugguGUCgGCg -3' miRNA: 3'- -GAACCGGa-GUAGUGGuCGGU-----CAGgCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 29739 | 0.69 | 0.477008 |
Target: 5'- -aUGGCCUCAUCGCCuucguacGCCucgaUGCg -3' miRNA: 3'- gaACCGGAGUAGUGGu------CGGucagGCG- -5' |
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12333 | 3' | -56.4 | NC_003324.1 | + | 29581 | 0.67 | 0.615028 |
Target: 5'- --aGGCCUCGUCGCUcgauuccucgGGCagaacGUCCuGCa -3' miRNA: 3'- gaaCCGGAGUAGUGG----------UCGgu---CAGG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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