Results 21 - 35 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 32367 | 0.68 | 0.518176 |
Target: 5'- --aGGCCgUUGUCGCCAGCguGUUCu- -3' miRNA: 3'- gaaCCGG-AGUAGUGGUCGguCAGGcg -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 14568 | 0.68 | 0.528693 |
Target: 5'- gUUGGCUg---CACCGGCU--UCCGCg -3' miRNA: 3'- gAACCGGaguaGUGGUCGGucAGGCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 7733 | 0.68 | 0.518176 |
Target: 5'- --cGGCCgCAUgGCCuGCCuauGUCCGa -3' miRNA: 3'- gaaCCGGaGUAgUGGuCGGu--CAGGCg -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 54297 | 0.69 | 0.477008 |
Target: 5'- --aGGCCUgCGUCugC-GCC-GUCUGCa -3' miRNA: 3'- gaaCCGGA-GUAGugGuCGGuCAGGCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 52237 | 0.69 | 0.447221 |
Target: 5'- --gGGCU--AUCACuCGGCCAGUUCGUc -3' miRNA: 3'- gaaCCGGagUAGUG-GUCGGUCAGGCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 43548 | 0.69 | 0.457037 |
Target: 5'- --aGGCUUCcagCAUCAGCCAcacgCCGCg -3' miRNA: 3'- gaaCCGGAGua-GUGGUCGGUca--GGCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 29739 | 0.69 | 0.477008 |
Target: 5'- -aUGGCCUCAUCGCCuucguacGCCucgaUGCg -3' miRNA: 3'- gaACCGGAGUAGUGGu------CGGucagGCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 6396 | 0.7 | 0.434638 |
Target: 5'- --cGGCCagcggaugugauccUCGUCgagaagcuggauACCGGCCAG-CCGCa -3' miRNA: 3'- gaaCCGG--------------AGUAG------------UGGUCGGUCaGGCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 30341 | 0.7 | 0.437523 |
Target: 5'- cCUUGGCCcgCAUCAUC-GCCGaugguGUCgGCg -3' miRNA: 3'- -GAACCGGa-GUAGUGGuCGGU-----CAGgCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 43096 | 0.7 | 0.406403 |
Target: 5'- --aGGCCcCAcUACCGGCCGGUucuccguugccgacCCGCg -3' miRNA: 3'- gaaCCGGaGUaGUGGUCGGUCA--------------GGCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 21379 | 0.7 | 0.427948 |
Target: 5'- cCUUaGCCUCgAUCGUCuGCCAcGUCCGCg -3' miRNA: 3'- -GAAcCGGAG-UAGUGGuCGGU-CAGGCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 21438 | 0.71 | 0.373211 |
Target: 5'- --aGGCC-CGguUCAuCCAGCaGGUCCGCa -3' miRNA: 3'- gaaCCGGaGU--AGU-GGUCGgUCAGGCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 32128 | 0.71 | 0.373211 |
Target: 5'- cCUUGGUCUC--CGCCucgGGCCGGgCCGCc -3' miRNA: 3'- -GAACCGGAGuaGUGG---UCGGUCaGGCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 43034 | 0.73 | 0.26501 |
Target: 5'- --gGGCCUgCAUUGCCGGUaaCGGUUCGCg -3' miRNA: 3'- gaaCCGGA-GUAGUGGUCG--GUCAGGCG- -5' |
|||||||
12333 | 3' | -56.4 | NC_003324.1 | + | 16114 | 1.11 | 0.000542 |
Target: 5'- aCUUGGCCUCAUCACCAGCCAGUCCGCc -3' miRNA: 3'- -GAACCGGAGUAGUGGUCGGUCAGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home