miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12333 3' -56.4 NC_003324.1 + 31779 0.66 0.669725
Target:  5'- -gUGGUUcgCGUCACCAGCaCGGggaUGCg -3'
miRNA:   3'- gaACCGGa-GUAGUGGUCG-GUCag-GCG- -5'
12333 3' -56.4 NC_003324.1 + 32086 0.66 0.67408
Target:  5'- --cGGCCUCgcugcgccucggcucGUCGCCGGUgAGgCCGa -3'
miRNA:   3'- gaaCCGGAG---------------UAGUGGUCGgUCaGGCg -5'
12333 3' -56.4 NC_003324.1 + 32128 0.71 0.373211
Target:  5'- cCUUGGUCUC--CGCCucgGGCCGGgCCGCc -3'
miRNA:   3'- -GAACCGGAGuaGUGG---UCGGUCaGGCG- -5'
12333 3' -56.4 NC_003324.1 + 32367 0.68 0.518176
Target:  5'- --aGGCCgUUGUCGCCAGCguGUUCu- -3'
miRNA:   3'- gaaCCGG-AGUAGUGGUCGguCAGGcg -5'
12333 3' -56.4 NC_003324.1 + 33346 0.66 0.647879
Target:  5'- -aUGGUCaUCGUC-CCGgugcgugguuGCCGGcUCCGCg -3'
miRNA:   3'- gaACCGG-AGUAGuGGU----------CGGUC-AGGCG- -5'
12333 3' -56.4 NC_003324.1 + 42117 0.66 0.647879
Target:  5'- gCUUcGCaCUCGUCGCCAauGCCg--CCGCg -3'
miRNA:   3'- -GAAcCG-GAGUAGUGGU--CGGucaGGCG- -5'
12333 3' -56.4 NC_003324.1 + 42867 0.66 0.658814
Target:  5'- --aGGCU-----GCCGGCCGGcCCGCg -3'
miRNA:   3'- gaaCCGGaguagUGGUCGGUCaGGCG- -5'
12333 3' -56.4 NC_003324.1 + 43034 0.73 0.26501
Target:  5'- --gGGCCUgCAUUGCCGGUaaCGGUUCGCg -3'
miRNA:   3'- gaaCCGGA-GUAGUGGUCG--GUCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 43096 0.7 0.406403
Target:  5'- --aGGCCcCAcUACCGGCCGGUucuccguugccgacCCGCg -3'
miRNA:   3'- gaaCCGGaGUaGUGGUCGGUCA--------------GGCG- -5'
12333 3' -56.4 NC_003324.1 + 43548 0.69 0.457037
Target:  5'- --aGGCUUCcagCAUCAGCCAcacgCCGCg -3'
miRNA:   3'- gaaCCGGAGua-GUGGUCGGUca--GGCG- -5'
12333 3' -56.4 NC_003324.1 + 43909 0.66 0.625976
Target:  5'- gUUGaGCCUUuggCGCCGGCaccgAGcCCGCa -3'
miRNA:   3'- gAAC-CGGAGua-GUGGUCGg---UCaGGCG- -5'
12333 3' -56.4 NC_003324.1 + 45940 0.66 0.625976
Target:  5'- --cGGCCUCG-CAUCAGgCGccCCGCg -3'
miRNA:   3'- gaaCCGGAGUaGUGGUCgGUcaGGCG- -5'
12333 3' -56.4 NC_003324.1 + 52237 0.69 0.447221
Target:  5'- --gGGCU--AUCACuCGGCCAGUUCGUc -3'
miRNA:   3'- gaaCCGGagUAGUG-GUCGGUCAGGCG- -5'
12333 3' -56.4 NC_003324.1 + 54173 0.67 0.588829
Target:  5'- -aUGcGCUUCGUCACaaacuggaugucgAGCCGGUCgGCc -3'
miRNA:   3'- gaAC-CGGAGUAGUGg------------UCGGUCAGgCG- -5'
12333 3' -56.4 NC_003324.1 + 54297 0.69 0.477008
Target:  5'- --aGGCCUgCGUCugC-GCC-GUCUGCa -3'
miRNA:   3'- gaaCCGGA-GUAGugGuCGGuCAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.